User profiles for N. R. Skrynnikov

Nikolai Skrynnikov

St. Petersburg State University / Purdue University
Verified email at spbu.ru
Cited by 9951

[BOOK][B] Amber 2021

…, J Shen, CL Simmerling, NR Skrynnikov… - 2021 - books.google.com
Amber is the collective name for a suite of programs that allow users to carry out molecular
dynamics simulations, particularly on biomolecules. None of the individual programs carries …

Slow dynamics in folded and unfolded states of an SH3 domain

M Tollinger, NR Skrynnikov, FAA Mulder… - Journal of the …, 2001 - ACS Publications
15 N relaxation dispersion experiments were applied to the isolated N-terminal SH3 domain
of the Drosophila protein drk (drkN SH3) to study microsecond to second time scale …

Measurement of Slow (μs−ms) Time Scale Dynamics in Protein Side Chains by 15N Relaxation Dispersion NMR Spectroscopy:  Application to Asn and Gln …

FAA Mulder, NR Skrynnikov, B Hon… - Journal of the …, 2001 - ACS Publications
A new NMR experiment is presented for the measurement of μs−ms time scale dynamics of
Asn and Gln side chains in proteins. Exchange contributions to the 15 N line widths of side …

Reconstructing NMR spectra of “invisible” excited protein states using HSQC and HMQC experiments

NR Skrynnikov, FW Dahlquist… - Journal of the American …, 2002 - ACS Publications
Carr−Purcell−Meiboom−Gill (CPMG) relaxation measurements employing trains of 180
pulses with variable pulse spacing provide valuable information about systems undergoing …

Structural characterization of proteins with an attached ATCUN motif by paramagnetic relaxation enhancement NMR spectroscopy

LW Donaldson, NR Skrynnikov, WY Choy… - Journal of the …, 2001 - ACS Publications
The use of a short, three-residue Cu 2+ -binding sequence, the ATCUN motif, is presented
as an approach for extracting long-range distance restraints from relaxation enhancement …

Deuterium Spin Probes of Side-Chain Dynamics in Proteins. 1. Measurement of Five Relaxation Rates per Deuteron in 13C-Labeled and Fractionally 2H-Enriched …

…, DR Muhandiram, NR Skrynnikov… - Journal of the …, 2002 - ACS Publications
New pulse sequences are presented for the measurement of the relaxation of deuterium
double quantum, quadrupolar order, and transverse antiphase magnetization in 13 CH 2 D …

Probing slow time scale dynamics at methyl-containing side chains in proteins by relaxation dispersion NMR measurements: application to methionine residues in a …

NR Skrynnikov, FAA Mulder, B Hon… - Journal of the …, 2001 - ACS Publications
A relaxation dispersion-based NMR experiment is presented for the measurement and
quantitation of μs−ms dynamic processes at methyl side-chain positions in proteins. The …

An NMR experiment for the accurate measurement of heteronuclear spin-lock relaxation rates

DM Korzhnev, NR Skrynnikov, O Millet… - Journal of the …, 2002 - ACS Publications
Rotating-frame relaxation rates, R 1 ρ , are often measured in NMR studies of protein dynamics.
We show here that large systematic errors can be introduced into measured values of …

Orienting domains in proteins using dipolar couplings measured by liquid-state NMR: differences in solution and crystal forms of maltodextrin binding protein loaded …

NR Skrynnikov, NK Goto, D Yang, WY Choy… - Journal of molecular …, 2000 - Elsevier
Protein function is often regulated by conformational changes that occur in response to ligand
binding or covalent modification such as phosphorylation. In many multidomain proteins …

Deuterium spin probes of side-chain dynamics in proteins. 2. Spectral density mapping and identification of nanosecond time-scale side-chain motions

NR Skrynnikov, O Millet, LE Kay - Journal of the American …, 2002 - ACS Publications
Skrynnikov. Detection of nanosecond time scale side-chain jumps in a protein dissolved
in water/glycerol solvent. Journal of Biomolecular NMR 2009, 45 (1-2) , 57-72. …