User profiles for N. Robine
Nicolas RobineDirector, Computational Biology. New York Genome Center Verified email at nygenome.org Cited by 9488 |
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
To gain insight into how genomic information is translated into cellular and developmental
programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) …
programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) …
[PDF][PDF] Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
Many approaches to identify therapeutically relevant neoantigens couple tumor sequencing
with bioinformatic algorithms and inferred rules of tumor epitope immunogenicity. However, …
with bioinformatic algorithms and inferred rules of tumor epitope immunogenicity. However, …
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer
Pancreatic cancer is the most lethal common solid malignancy. Systemic therapies are often
ineffective, and predictive biomarkers to guide treatment are urgently needed. We …
ineffective, and predictive biomarkers to guide treatment are urgently needed. We …
Detection of a Recurrent DNAJB1-PRKACA Chimeric Transcript in Fibrolamellar Hepatocellular Carcinoma
Fibrolamellar hepatocellular carcinoma (FL-HCC) is a rare liver tumor affecting adolescents
and young adults with no history of primary liver disease or cirrhosis. We identified a …
and young adults with no history of primary liver disease or cirrhosis. We identified a …
[HTML][HTML] Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences
… either beginning at weaning at day 28 of life (LDP-w, n = 5 male, 6 female), or from birth (LDP-b,
n = 5 male, 4 female). Control mice had no penicillin exposure (n = 6 male, 5 female). …
n = 5 male, 4 female). Control mice had no penicillin exposure (n = 6 male, 5 female). …
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis
Canonical animal microRNAs (miRNAs) are generated by sequential cleavage of precursor
substrates by the Drosha and Dicer RNase III enzymes. Several variant pathways exploit …
substrates by the Drosha and Dicer RNase III enzymes. Several variant pathways exploit …
[PDF][PDF] A broadly conserved pathway generates 3′ UTR-directed primary piRNAs
… However, we observed no overall enrichment for TEs in the 30UTRs of piRNA-generating
mRNAs (data not shown). Indeed, many Drosophila and mammalian 30UTRs with highest …
mRNAs (data not shown). Indeed, many Drosophila and mammalian 30UTRs with highest …
Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo
…, C Papin, A Boureux, AC Meunier, B Franco, N Robine… - Nature, 2010 - nature.com
… This resulted in defects in embryo patterning: a total of 35% (n = 1,894) of embryos from
nos(Δ3) females did not hatch and among them 86% (n = 28) showed head skeleton defects (Fig…
nos(Δ3) females did not hatch and among them 86% (n = 28) showed head skeleton defects (Fig…
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
The function of histone modifications in initiating and regulating the chromosomal events of
the meiotic prophase remains poorly understood. In Saccharomyces cerevisiae, we …
the meiotic prophase remains poorly understood. In Saccharomyces cerevisiae, we …
Immunogenic neoantigens derived from gene fusions stimulate T cell responses
…, N Katabi, Z Nadeem, MA Cohen, SK Tian, N Robine… - Nature medicine, 2019 - nature.com
… For further confirmation of these results, we cloned the region of DEK that is N-terminal to
the fusion breakpoint (DEK-N-term), or DEK fused to an equal length of AFF2 C-terminal to the …
the fusion breakpoint (DEK-N-term), or DEK fused to an equal length of AFF2 C-terminal to the …