The role of protein dynamics in the evolution of new enzyme function

E Campbell, M Kaltenbach, GJ Correy, PD Carr… - Nature chemical …, 2016 - nature.com
Enzymes must be ordered to allow the stabilization of transition states by their active sites,
yet dynamic enough to adopt alternative conformations suited to other steps in their catalytic …

Evolution of an organophosphate-degrading enzyme: a comparison of natural and directed evolution

H Yang, PD Carr, SY McLoughlin, JW Liu… - Protein …, 2003 - academic.oup.com
Organophosphate-degrading enzyme from Agrobacterium radiobacter P230 (OPDA) is a
recently discovered enzyme that degrades a broad range of organophosphates. It is very …

α/βHydrolase fold: an update

PD Carr, DL Ollis - Protein and peptide letters, 2009 - ingentaconnect.com
The α/βhydrolase superfamily has rapidly expanded in recent years and continues to do so
at an expeditious pace. According to the ESTHER database (http://bioweb.ensam.inra.fr/…

[PDF][PDF] Structural basis for proofreading during replication of the Escherichia coli chromosome

S Hamdan, PD Carr, SE Brown, DL Ollis, NE Dixon - Structure, 2002 - cell.com
The ϵ subunit of the Escherichia coli replicative DNA polymerase III is the proofreading 3′–5′
exonuclease. Structures of its catalytic N-terminal domain (ϵ186) were determined at …

Structure and function of an insect α-carboxylesterase (αEsterase7) associated with insecticide resistance

CJ Jackson, JW Liu, PD Carr… - Proceedings of the …, 2013 - National Acad Sciences
Insect carboxylesterases from the αEsterase gene cluster, such as αE7 (also known as E3)
from the Australian sheep blowfly Lucilia cuprina (LcαE7), play an important physiological …

Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase

…, JL Foo, N Tokuriki, L Afriat, PD Carr… - Proceedings of the …, 2009 - National Acad Sciences
To efficiently catalyze a chemical reaction, enzymes are required to maintain fast rates for
formation of the Michaelis complex, the chemical reaction and product release. These distinct …

[HTML][HTML] Sterol biosynthesis and azole tolerance is governed by the opposing actions of SrbA and the CCAAT binding complex

F Gsaller, P Hortschansky, T Furukawa, PD Carr… - PLoS …, 2016 - journals.plos.org
Azole drugs selectively target fungal sterol biosynthesis and are critical to our antifungal
therapeutic arsenal. However, resistance to this class of drugs, particularly in the major human …

Evolution of cyclohexadienyl dehydratase from an ancestral solute-binding protein

BE Clifton, JA Kaczmarski, PD Carr, ML Gerth… - Nature chemical …, 2018 - nature.com
The emergence of enzymes through the neofunctionalization of noncatalytic proteins is
ultimately responsible for the extraordinary range of biological catalysts observed in nature. …

[HTML][HTML] The evolution of multiple active site configurations in a designed enzyme

…, P Bauer, PD Carr, CY Lin, PD Mabbitt… - Nature …, 2018 - nature.com
Developments in computational chemistry, bioinformatics, and laboratory evolution have
facilitated the de novo design and catalytic optimization of enzymes. Besides creating useful …

Higher-order epistasis shapes the fitness landscape of a xenobiotic-degrading enzyme

…, F Baier, E Dohmen, N Hong, PD Carr… - Nature Chemical …, 2019 - nature.com
Characterizing the adaptive landscapes that encompass the emergence of novel enzyme
functions can provide molecular insights into both enzymatic and evolutionary mechanisms. …