User profiles for P. Ciryam

Prajwal Ciryam

Assistant Professor, Neurocritical Care, University of Maryland and Shock Trauma Center
Verified email at som.umaryland.edu
Cited by 1982

Supersaturation is a major driving force for protein aggregation in neurodegenerative diseases

P Ciryam, R Kundra, RI Morimoto, CM Dobson… - Trends in …, 2015 - cell.com
The solubility of proteins is an essential requirement for their function. Nevertheless, these
ubiquitous molecules can undergo aberrant aggregation when the protein homeostasis …

Understanding the influence of codon translation rates on cotranslational protein folding

EP O'Brien, P Ciryam, M Vendruscolo… - Accounts of chemical …, 2014 - ACS Publications
Conspectus Protein domains can fold into stable tertiary structures while they are synthesized
by the ribosome in a process known as cotranslational folding. If a protein does not fold …

[PDF][PDF] Widespread proteome remodeling and aggregation in aging C. elegans

…, P Kasturi, M Zheng, S Pinkert, G Vecchi, P Ciryam… - Cell, 2015 - cell.com
Aging has been associated with a progressive decline of proteostasis, but how this process
affects proteome composition remains largely unexplored. Here, we profiled more than 5,000 …

[PDF][PDF] Widespread aggregation and neurodegenerative diseases are associated with supersaturated proteins

P Ciryam, GG Tartaglia, RI Morimoto, CM Dobson… - Cell reports, 2013 - cell.com
… Our interest is in whether the overall distribution of p-values is significantly skewed below
p=0.05. For this purpose, the multiple hypothesis corrections previously described are …

A protein homeostasis signature in healthy brains recapitulates tissue vulnerability to Alzheimer's disease

R Freer, P Sormanni, G Vecchi, P Ciryam… - Science …, 2016 - science.org
… Because of the high number of data and hypotheses tested in this study, we adjusted the
P values to reduce the false discovery rate (FDR). Specifically, for Figs. 1 and 3 to 5 and figs. …

Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS

P Ciryam, IA Lambert-Smith, DM Bean… - Proceedings of the …, 2017 - National Acad Sciences
… To correct for multiple hypotheses, we adjusted these P values to the Benjamini–Hochberg-derived
Q values calculated separately for the enrichment testing on the coaggregators and …

In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome

P Ciryam, RI Morimoto… - Proceedings of the …, 2013 - National Acad Sciences
A question of fundamental importance concerning protein folding in vivo is whether the kinetics
of translation or the thermodynamics of the ribosome nascent chain (RNC) complex is the …

[HTML][HTML] Clinical utilization of the FilmArray meningitis/encephalitis (ME) multiplex polymerase chain reaction (PCR) assay

S Radmard, S Reid, P Ciryam, A Boubour, N Ho… - Frontiers in …, 2019 - frontiersin.org
… A p < 0.05 was considered statistically significant in all analyses. All statistical analyses
were performed using STATA version 13 software (StataCorp, College Station, TX). …

Protein homeostasis of a metastable subproteome associated with Alzheimer's disease

R Kundra, P Ciryam, RI Morimoto… - Proceedings of the …, 2017 - National Acad Sciences
… Coloring of the table encodes −log(p), with p being the Fisher’s exact test P value for the
overlap of the two modules. The table indicates that most of the modules of the VC dataset have …

A transcriptional signature of Alzheimer's disease is associated with a metastable subproteome at risk for aggregation

P Ciryam, R Kundra, R Freer… - Proceedings of the …, 2016 - National Acad Sciences
… In general, we had 10 P values because we analyzed 10 microarray studies separately,
although in some cases there were fewer than 10 P values because some genes are …