User profiles for P. Ciryam
Prajwal CiryamAssistant Professor, Neurocritical Care, University of Maryland and Shock Trauma Center Verified email at som.umaryland.edu Cited by 1982 |
Supersaturation is a major driving force for protein aggregation in neurodegenerative diseases
The solubility of proteins is an essential requirement for their function. Nevertheless, these
ubiquitous molecules can undergo aberrant aggregation when the protein homeostasis …
ubiquitous molecules can undergo aberrant aggregation when the protein homeostasis …
Understanding the influence of codon translation rates on cotranslational protein folding
Conspectus Protein domains can fold into stable tertiary structures while they are synthesized
by the ribosome in a process known as cotranslational folding. If a protein does not fold …
by the ribosome in a process known as cotranslational folding. If a protein does not fold …
[PDF][PDF] Widespread proteome remodeling and aggregation in aging C. elegans
Aging has been associated with a progressive decline of proteostasis, but how this process
affects proteome composition remains largely unexplored. Here, we profiled more than 5,000 …
affects proteome composition remains largely unexplored. Here, we profiled more than 5,000 …
[PDF][PDF] Widespread aggregation and neurodegenerative diseases are associated with supersaturated proteins
… Our interest is in whether the overall distribution of p-values is significantly skewed below
p=0.05. For this purpose, the multiple hypothesis corrections previously described are …
p=0.05. For this purpose, the multiple hypothesis corrections previously described are …
A protein homeostasis signature in healthy brains recapitulates tissue vulnerability to Alzheimer's disease
… Because of the high number of data and hypotheses tested in this study, we adjusted the
P values to reduce the false discovery rate (FDR). Specifically, for Figs. 1 and 3 to 5 and figs. …
P values to reduce the false discovery rate (FDR). Specifically, for Figs. 1 and 3 to 5 and figs. …
Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS
… To correct for multiple hypotheses, we adjusted these P values to the Benjamini–Hochberg-derived
Q values calculated separately for the enrichment testing on the coaggregators and …
Q values calculated separately for the enrichment testing on the coaggregators and …
In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome
P Ciryam, RI Morimoto… - Proceedings of the …, 2013 - National Acad Sciences
A question of fundamental importance concerning protein folding in vivo is whether the kinetics
of translation or the thermodynamics of the ribosome nascent chain (RNC) complex is the …
of translation or the thermodynamics of the ribosome nascent chain (RNC) complex is the …
[HTML][HTML] Clinical utilization of the FilmArray meningitis/encephalitis (ME) multiplex polymerase chain reaction (PCR) assay
… A p < 0.05 was considered statistically significant in all analyses. All statistical analyses
were performed using STATA version 13 software (StataCorp, College Station, TX). …
were performed using STATA version 13 software (StataCorp, College Station, TX). …
Protein homeostasis of a metastable subproteome associated with Alzheimer's disease
R Kundra, P Ciryam, RI Morimoto… - Proceedings of the …, 2017 - National Acad Sciences
… Coloring of the table encodes −log(p), with p being the Fisher’s exact test P value for the
overlap of the two modules. The table indicates that most of the modules of the VC dataset have …
overlap of the two modules. The table indicates that most of the modules of the VC dataset have …
A transcriptional signature of Alzheimer's disease is associated with a metastable subproteome at risk for aggregation
… In general, we had 10 P values because we analyzed 10 microarray studies separately,
although in some cases there were fewer than 10 P values because some genes are …
although in some cases there were fewer than 10 P values because some genes are …