User profiles for P. Kathail
 | Pooja KathailUC Berkeley Verified email at berkeley.edu Cited by 2143 |
[PDF][PDF] Recovering gene interactions from single-cell data using data diffusion
… Our predicted ZEB1 targets are indeed upregulated in the ZEB1 induction with a significance
of p = 3.1EÀ73, against a background of all genes involved in EMT (Figure 6C). Including …
of p = 3.1EÀ73, against a background of all genes involved in EMT (Figure 6C). Including …
Wishbone identifies bifurcating developmental trajectories from single-cell data
Recent single-cell analysis technologies offer an unprecedented opportunity to elucidate
developmental pathways. Here we present Wishbone, an algorithm for positioning single cells …
developmental pathways. Here we present Wishbone, an algorithm for positioning single cells …
[HTML][HTML] Personal transcriptome variation is poorly explained by current genomic deep learning models
… c, Cross-individual Spearman rank correlations for Enformer compared with the P value of
the most statistically significant eQTL in each gene (top left), the distance to the TSS for that …
the most statistically significant eQTL in each gene (top left), the distance to the TSS for that …
Population Diversity at the Single-Cell Level
… in p value distributions that are either unduly inflated or deflated. This is particularly problematic
in studies necessitating thousands of comparisons, as inadequately calibrated p values …
in studies necessitating thousands of comparisons, as inadequately calibrated p values …
Characterizing uncertainty in predictions of genomic sequence-to-activity models
… In a supervised learning setup, with inputs x and outputs y related through the joint distribution
q(x, y), we can train a model p(y | x, θ) on a finite dataset D = {(x1,y1),..., (xn,yn)} ∼ q(x, y) …
q(x, y), we can train a model p(y | x, θ) on a finite dataset D = {(x1,y1),..., (xn,yn)} ∼ q(x, y) …
Multicast optimization for CLOS fabric in media data centers
A Latif, P Kathail, S Vishwarupe… - … on Network and …, 2019 - ieeexplore.ieee.org
… All spines in the fabric have the same maximum forwarding capacity P. … Dhesikan and
P. Kathail. Broadcast and network integration using the network control (sdn) api. In Annual …
P. Kathail. Broadcast and network integration using the network control (sdn) api. In Annual …
Technical debt: from source to mitigation
The term "Technical Debt" was coined over 20 years ago by Ward Cunningham in a 1992
OOPSLA experience report. Ward used "Technical debt" to describe the trade-offs be-tween …
OOPSLA experience report. Ward used "Technical debt" to describe the trade-offs be-tween …
Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response
… over 𝑟=3 conditions can be encoded using 𝑝 = 10 113 pools. However, it may … 𝑝=6 pools
to ensure demultiplexing (Fig. 1D), and an error- 119 tolerant multiplexing scheme required 𝑝 …
to ensure demultiplexing (Fig. 1D), and an error- 119 tolerant multiplexing scheme required 𝑝 …
Broadcast and network integration using the network control (sdn) api
S Dhesikan, P Kathail - SMPTE 2016 Annual Technical …, 2016 - ieeexplore.ieee.org
IP based Live Broadcast production is almost here and a production-ready system requires
more than basic management of media flows. A production-ready system must have …
more than basic management of media flows. A production-ready system must have …
Technical debt: past, present, and future (panel)
…, B Boehm, P Kathail, P Kruchten… - 2013 35th …, 2013 - ieeexplore.ieee.org
The term “Technical Debt” was coined over 20 years ago by Ward Cunningham in a 1992
OOPSL A experience report to de scribe the tr ade-offs between delivering the most …
OOPSL A experience report to de scribe the tr ade-offs between delivering the most …