Background: Some studies have been conducted to assess the composition of the bacterial
communities inhabiting human milk, but they did not evaluate the presence of other …

BG7 is a new system for de novo bacterial, archaeal and viral genome annotation based on
a new approach specifically designed for annotating genomes sequenced with next …

Background Transcriptional regulation processes are the principal mechanisms of adaptation
in prokaryotes. In these processes, the regulatory proteins and the regulatory DNA signals …

Background Next Generation Sequencing and other high-throughput technologies have
brought a revolution to the bioinformatics landscape, by offering sheer amounts of data about …

Establishing the architecture of gene regulatory networks (GRNs) relies on chromatin
immunoprecipitation followed by massively parallel sequencing (ChIP-Seq) methods that provide …

New massive sequencing technologies are providing many bacterial genome sequences
from diverse taxa but a refined annotation of these genomes is crucial for obtaining scientific …

Today’s biology involves many times the use of different omics approaches, in particular, data
and information from genomes and proteins are frequently difficult to integrate. In order to …

We have annotated the European outbreak E. coli EHEC genome sequenced by BGI (6-2-2011)
and assembled with MIRA by Nick Loman (6-2-2011 ). Our system BG7, Bacterial …

… p is a coefficient fixed by the user to define the bitscore required, eg if p = 0.9 and S = 700
the required bitscore threshold would be 630. Once we have the definitive HSPs selected, we …

We present formally a search space representation method in combinatorial optimization
problems, as well as a tool for the visualization of the trajectories of heuristic algorithms based …