User profiles for R. F. McCormick

Ryan Franklin McCormick

Staff Scientist, Gro Intelligence
Verified email at gro-intelligence.com
Cited by 1674

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization

RF McCormick, SK Truong, A Sreedasyam… - The Plant …, 2018 - Wiley Online Library
Sorghum bicolor is a drought tolerant C4 grass used for the production of grain, forage, sugar,
and lignocellulosic biomass and a genetic model for C4 grasses due to its relatively small …

Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex

…, EL Bredeweg, HD Priest, RF McCormick… - Eukaryotic …, 2010 - Am Soc Microbiol
Light signaling pathways and circadian clocks are inextricably linked and have profound
effects on behavior in most organisms. Here, we used chromatin immunoprecipitation (ChIP) …

3D sorghum reconstructions from depth images identify QTL regulating shoot architecture

RF McCormick, SK Truong, JE Mullet - Plant physiology, 2016 - academic.oup.com
Dissecting the genetic basis of complex traits is aided by frequent and nondestructive
measurements. Advances in range imaging technologies enable the rapid acquisition of three-…

Harnessing Genetic Variation in Leaf Angle to Increase Productivity of Sorghum bicolor

SK Truong, RF McCormick, WL Rooney, JE Mullet - Genetics, 2015 - academic.oup.com
The efficiency with which a plant intercepts solar radiation is determined primarily by its
architecture. Understanding the genetic regulation of plant architecture and how changes in …

[HTML][HTML] Sorghum Dw2 Encodes a Protein Kinase Regulator of Stem Internode Length

JL Hilley, BD Weers, SK Truong, RF McCormick… - Scientific reports, 2017 - nature.com
Sorghum is an important C4 grass crop grown for grain, forage, sugar, and bioenergy production.
While tall, late flowering landraces are commonly grown in Africa, short early flowering …

RIG: Recalibration and interrelation of genomic sequence data with the GATK

RF McCormick, SK Truong… - G3: Genes, Genomes …, 2015 - academic.oup.com
Recent advances in variant calling made available in the Genome Analysis Toolkit (GATK)
enable the use of validated single-nucleotide polymorphisms and indels to improve variant …

[HTML][HTML] Extensive variation in the density and distribution of DNA polymorphism in sorghum genomes

J Evans, RF McCormick, D Morishige, SN Olson… - PloS one, 2013 - journals.plos.org
Sorghum genotypes currently used for grain production in the United States were developed
from African landraces that were imported starting in the mid-to-late 19 th century. Farmers …

Intercontinental prediction of soybean phenology via hybrid ensemble of knowledge-based and data-driven models

RF McCormick, SK Truong, J Rotundo… - in silico …, 2021 - academic.oup.com
ABSTRACTThe timing of crop development has significant impacts on management decisions
and subsequent yield formation. A large intercontinental dataset recording the timing of …

Crop improvement for circular bioeconomy systems

…, T Tang, SK Truong, RF McCormick… - Journal of the …, 2022 - elibrary.asabe.org
Highlights We describe and demonstrate a multidimensional framework to integrate
environmental and genomic predictors to enable crop improvement for a circular bioeconomy. A …

Exploring avenues for agricultural intensification: a case study for maize-soybean in the Southern US region

…, S Day, J Oliverio, SH Truong, RF McCormick… - Agricultural …, 2023 - Elsevier
CONTEXT Crop intensification is a key aspect for achieving global food security and exploring
options for optimizing land use and environmental resources. Following this rationale, a …