Genomics in conservation: case studies and bridging the gap between data and application
BA Garner, BK Hand, SJ Amish, L Bernatchez… - Trends in ecology & …, 2016 - cell.com
We agree with Shafer et al.[1] that there is a need for well-documented case studies of the
application of genomics in conservation and management as well as increased …
application of genomics in conservation and management as well as increased …
Next‐generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout
PA Hohenlohe, SJ Amish, JM Catchen… - Molecular ecology …, 2011 - Wiley Online Library
The increased numbers of genetic markers produced by genomic techniques have the
potential to both identify hybrid individuals and localize chromosomal regions responding to …
potential to both identify hybrid individuals and localize chromosomal regions responding to …
RAD capture (Rapture): flexible and efficient sequence-based genotyping
Massively parallel sequencing has revolutionized many areas of biology, but sequencing large
amounts of DNA in many individuals is cost-prohibitive and unnecessary for many studies…
amounts of DNA in many individuals is cost-prohibitive and unnecessary for many studies…
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired‐end RAD sequencing
Rapid and inexpensive methods for genomewide single nucleotide polymorphism ( SNP )
discovery and genotyping are urgently needed for population management and conservation. …
discovery and genotyping are urgently needed for population management and conservation. …
Legacy introductions and climatic variation explain spatiotemporal patterns of invasive hybridization in a native trout
…, RP Kovach, R Al‐Chokhachy, SJ Amish… - Global Change …, 2017 - Wiley Online Library
Hybridization between invasive and native species, a significant threat to worldwide biodiversity,
is predicted to increase due to climate‐induced expansions of invasive species. Long‐…
is predicted to increase due to climate‐induced expansions of invasive species. Long‐…
Improved detection of rare, endangered and invasive trout in using a new large‐volume sampling method for eDNA capture
…, R Al‐Chokhachy, G Luikart, SJ Amish - Environmental …, 2019 - Wiley Online Library
Environmental DNA (eDNA) detection probability increases with volume of water sampled.
Common approaches for collecting eDNA samples often require many samples since these …
Common approaches for collecting eDNA samples often require many samples since these …
RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species‐diagnostic SNP assays
SJ Amish, PA Hohenlohe, S Painter… - Molecular ecology …, 2012 - Wiley Online Library
Hybridization with introduced rainbow trout threatens most native westslope cutthroat trout
populations. Understanding the genetic effects of hybridization and introgression requires a …
populations. Understanding the genetic effects of hybridization and introgression requires a …
Increased eDNA detection sensitivity using a novel high‐volume water sampling method
JC Schabacker, SJ Amish, BK Ellis… - Environmental …, 2020 - Wiley Online Library
Environmental DNA analysis has revolutionized the way we study rare, invasive, and
endangered taxa. However, if eDNA testing is to become an increasingly reliable tool, high …
endangered taxa. However, if eDNA testing is to become an increasingly reliable tool, high …
Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones
…, HH Neville, CC Muhlfeld, SJ Amish… - … of the Royal …, 2016 - royalsocietypublishing.org
Evolutionary and ecological consequences of hybridization between native and invasive
species are notoriously complicated because patterns of selection acting on non-native alleles …
species are notoriously complicated because patterns of selection acting on non-native alleles …
Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity
KA Harrisson, SJ Amish, A Pavlova… - Molecular …, 2017 - Wiley Online Library
Adaptive differences across species’ ranges can have important implications for population
persistence and conservation management decisions. Despite advances in genomic …
persistence and conservation management decisions. Despite advances in genomic …