User profiles for S. Castillo-Hair
Sebastian Castillo-HairUniversity of Washington Verified email at uw.edu Cited by 489 |
Machine learning for designing next-generation mRNA therapeutics
SM Castillo-Hair, G Seelig - Accounts of Chemical Research, 2021 - ACS Publications
Conspectus Over just the last 2 years, mRNA therapeutics and vaccines have undergone a
rapid transition from an intriguing concept to real-world impact. However, whereas some …
rapid transition from an intriguing concept to real-world impact. However, whereas some …
[HTML][HTML] An open-hardware platform for optogenetics and photobiology
KP Gerhardt, EJ Olson, SM Castillo-Hair… - Scientific reports, 2016 - nature.com
… We set the 533 nm LED to 0.40 μmol m −2 s −1 and each bottom LED to 3.21 μmol m −2 s
−1 because CcaS-CcaR has approximately 10-fold greater sensitivity to green than red light (…
−1 because CcaS-CcaR has approximately 10-fold greater sensitivity to green than red light (…
FlowCal: a user-friendly, open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units
… coli and S. cerevisiae gene expression systems and two different flow cytometers. First, … ’s
compatibility with eukaryotic cells by calibrating Venus measurements from a light-inducible S. …
compatibility with eukaryotic cells by calibrating Venus measurements from a light-inducible S. …
[HTML][HTML] Optogenetic control of Bacillus subtilis gene expression
SM Castillo-Hair, EA Baerman, M Fujita… - Nature …, 2019 - nature.com
… Total LED power output in μmol s −1 was measured using a spectrometer (StellarNet UVN-…
of 20 μmol m −2 s −1 or more for red LEDs and 50 μmol m −2 s −1 or more for green LEDs. …
of 20 μmol m −2 s −1 or more for red LEDs and 50 μmol m −2 s −1 or more for green LEDs. …
Design principles for robust oscillatory behavior
… An activating interaction catalyzes the conversion of an enzyme’s inactive form into the active
form. For example, an activating interaction of component A over component B, denoted by …
form. For example, an activating interaction of component A over component B, denoted by …
An Engineered B. subtilis Inducible Promoter System with over 10 000-Fold Dynamic Range
… A one-sample Student’s t test was conducted for every sample to evaluate whether sfGFP
fluorescence was significantly different from zero (one-sided, p < 0.05). Fluorescence of …
fluorescence was significantly different from zero (one-sided, p < 0.05). Fluorescence of …
How to train your microbe: methods for dynamically characterizing gene networks
… This study demonstrates that the S. cerevisiae TF Msn2 translocates to the nucleus with
different dynamics depending on the nature and magnitude of the stress. 1-NM-PP1 is also used …
different dynamics depending on the nature and magnitude of the stress. 1-NM-PP1 is also used …
Communicating structure and function in synthetic biology diagrams
…, S Bhakta, M Bissell, S Castillo Hair… - ACS synthetic …, 2019 - ACS Publications
… Diagrams are found at every stage of a system’s development, from idea and requirements
capture to refinement and realization, from analysis and debugging to deployment, operations…
capture to refinement and realization, from analysis and debugging to deployment, operations…
Meeting measurement precision requirements for effective engineering of genetic regulatory networks
… predictive accuracy m of a model, the precision μ of property value measurements, the
estimated range r̂ over which a property value will fulfill its specification, and the probability p s …
estimated range r̂ over which a property value will fulfill its specification, and the probability p s …
Optimizing 5'UTRs for mRNA-delivered gene editing using deep learning
mRNA therapeutics are revolutionizing the pharmaceutical industry, but methods to optimize
the primary sequence for increased expression are still lacking. Here, we design 5'UTRs for …
the primary sequence for increased expression are still lacking. Here, we design 5'UTRs for …