Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India
Delhi, the national capital of India, experienced multiple severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of >50…
coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of >50…
[HTML][HTML] Exhaustion of tumor-specific CD8+ T cells in metastases from melanoma patients
…, E Devêvre, SK Raghav… - The Journal of …, 2011 - Am Soc Clin Investig
In chronic viral infections, CD8 + T cells become functionally deficient and display multiple
molecular alterations. In contrast, only little is known of self- and tumor-specific CD8 + T cells …
molecular alterations. In contrast, only little is known of self- and tumor-specific CD8 + T cells …
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription
H Kilpinen, SM Waszak, AR Gschwind, SK Raghav… - Science, 2013 - science.org
DNA sequence variation has been associated with quantitative changes in molecular
phenotypes such as gene expression, but its impact on chromatin states is poorly characterized. …
phenotypes such as gene expression, but its impact on chromatin states is poorly characterized. …
[PDF][PDF] Population variation and genetic control of modular chromatin architecture in humans
…, O Delaneau, AR Gschwind, H Kilpinen, SK Raghav… - Cell, 2015 - cell.com
Chromatin state variation at gene regulatory elements is abundant across individuals, yet we
understand little about the genetic basis of this variability. Here, we profiled several histone …
understand little about the genetic basis of this variability. Here, we profiled several histone …
[PDF][PDF] Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming
LL Elo, H Järvenpää, S Tuomela, S Raghav, H Ahlfors… - Immunity, 2010 - cell.com
Dissecting the molecular mechanisms by which T helper (Th) cells differentiate to effector Th2
cells is important for understanding the pathogenesis of immune-mediated diseases, such …
cells is important for understanding the pathogenesis of immune-mediated diseases, such …
Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization
…, P Cousin, F Gilardi, P Gos, S Raghav… - Genome …, 2014 - genome.cshlp.org
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) experiments are
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…
[HTML][HTML] A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments
TD Laajala, S Raghav, S Tuomela, R Lahesmaa… - BMC genomics, 2009 - Springer
Background Chromatin immunoprecipitation coupled with massively parallel sequencing (ChIP-seq)
is increasingly being applied to study transcriptional regulation on a genome-wide …
is increasingly being applied to study transcriptional regulation on a genome-wide …
[PDF][PDF] Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO
SK Raghav, SM Waszak, I Krier, C Gubelmann… - Molecular cell, 2012 - cell.com
The molecular role of corepressors is poorly understood. Here, we studied the transcriptional
function of the corepressor SMRT during terminal adipogenesis. Genome-wide DNA-…
function of the corepressor SMRT during terminal adipogenesis. Genome-wide DNA-…
TRIM16 controls assembly and degradation of protein aggregates by modulating the p62‐NRF2 axis and autophagy
Sequestration of protein aggregates in inclusion bodies and their subsequent degradation
prevents proteostasis imbalance, cytotoxicity, and proteinopathies. The underlying molecular …
prevents proteostasis imbalance, cytotoxicity, and proteinopathies. The underlying molecular …
Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network
C Gubelmann, PC Schwalie, SK Raghav, E Röder… - elife, 2014 - elifesciences.org
10.7554/eLife.03346.001 Adipose tissue is a key determinant of whole body metabolism
and energy homeostasis. Unraveling the regulatory mechanisms underlying adipogenesis is …
and energy homeostasis. Unraveling the regulatory mechanisms underlying adipogenesis is …