Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India

…, A Dalal, S Sivasubbu, V Scaria, A Parida, SK Raghav… - Science, 2021 - science.org
Delhi, the national capital of India, experienced multiple severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) outbreaks in 2020 and reached population seropositivity of >50…

[HTML][HTML] Exhaustion of tumor-specific CD8+ T cells in metastases from melanoma patients

…, E Devêvre, SK Raghav… - The Journal of …, 2011 - Am Soc Clin Investig
In chronic viral infections, CD8 + T cells become functionally deficient and display multiple
molecular alterations. In contrast, only little is known of self- and tumor-specific CD8 + T cells …

Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription

H Kilpinen, SM Waszak, AR Gschwind, SK Raghav… - Science, 2013 - science.org
DNA sequence variation has been associated with quantitative changes in molecular
phenotypes such as gene expression, but its impact on chromatin states is poorly characterized. …

[PDF][PDF] Population variation and genetic control of modular chromatin architecture in humans

…, O Delaneau, AR Gschwind, H Kilpinen, SK Raghav… - Cell, 2015 - cell.com
Chromatin state variation at gene regulatory elements is abundant across individuals, yet we
understand little about the genetic basis of this variability. Here, we profiled several histone …

[PDF][PDF] Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming

LL Elo, H Järvenpää, S Tuomela, S Raghav, H Ahlfors… - Immunity, 2010 - cell.com
Dissecting the molecular mechanisms by which T helper (Th) cells differentiate to effector Th2
cells is important for understanding the pathogenesis of immune-mediated diseases, such …

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization

…, P Cousin, F Gilardi, P Gos, S Raghav… - Genome …, 2014 - genome.cshlp.org
Chromatin immunoprecipitation followed by deep sequencing (ChIP-seq) experiments are
widely used to determine, within entire genomes, the occupancy sites of any protein of interest…

[HTML][HTML] A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

TD Laajala, S Raghav, S Tuomela, R Lahesmaa… - BMC genomics, 2009 - Springer
Background Chromatin immunoprecipitation coupled with massively parallel sequencing (ChIP-seq)
is increasingly being applied to study transcriptional regulation on a genome-wide …

[PDF][PDF] Integrative genomics identifies the corepressor SMRT as a gatekeeper of adipogenesis through the transcription factors C/EBPβ and KAISO

SK Raghav, SM Waszak, I Krier, C Gubelmann… - Molecular cell, 2012 - cell.com
The molecular role of corepressors is poorly understood. Here, we studied the transcriptional
function of the corepressor SMRT during terminal adipogenesis. Genome-wide DNA-…

TRIM16 controls assembly and degradation of protein aggregates by modulating the p62‐NRF2 axis and autophagy

…, PK Sahoo, A Ahad, GH Syed, SK Raghav… - The EMBO …, 2018 - embopress.org
Sequestration of protein aggregates in inclusion bodies and their subsequent degradation
prevents proteostasis imbalance, cytotoxicity, and proteinopathies. The underlying molecular …

Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network

C Gubelmann, PC Schwalie, SK Raghav, E Röder… - elife, 2014 - elifesciences.org
10.7554/eLife.03346.001 Adipose tissue is a key determinant of whole body metabolism
and energy homeostasis. Unraveling the regulatory mechanisms underlying adipogenesis is …