User profiles for T. H. Oakley
Todd OakleyProfessor of Ecology Evolution and Marine Biology, University of California Santa Barbara Verified email at ucsb.edu Cited by 11057 |
Reconstructing ancestral character states: a critical reappraisal
Using parsimony to reconstruct ancestral character states on a phylogenetic tree has become
a popular method for testing ecological and evolutionary hypotheses. Despite its popularity…
a popular method for testing ecological and evolutionary hypotheses. Despite its popularity…
The dynamic evolutionary history of pancrustacean eyes and opsins
Pancrustacea (Hexapoda plus Crustacea) display an enormous diversity of eye designs,
including multiple types of compound eyes and single-chambered eyes, often with color vision …
including multiple types of compound eyes and single-chambered eyes, often with color vision …
The Ecoresponsive Genome of Daphnia pulex
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200
megabases and contains at least 30,907 genes. The high gene count is a consequence of an …
megabases and contains at least 30,907 genes. The high gene count is a consequence of an …
[HTML][HTML] The Amphimedon queenslandica genome and the evolution of animal complexity
Sponges are an ancient group of animals that diverged from other metazoans over 600 million
years ago. Here we present the draft genome sequence of Amphimedon queenslandica, …
years ago. Here we present the draft genome sequence of Amphimedon queenslandica, …
[HTML][HTML] The new biology: beyond the modern synthesis
Background The last third of the 20 th Century featured an accumulation of research findings
that severely challenged the assumptions of the "Modern Synthesis" which provided the …
that severely challenged the assumptions of the "Modern Synthesis" which provided the …
[HTML][HTML] Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity
Background Two decades of research showing that increasing plant diversity results in
greater community productivity has been predicated on greater functional diversity allowing …
greater community productivity has been predicated on greater functional diversity allowing …
Evolutionary history and the effect of biodiversity on plant productivity
…, BJ Cardinale, TH Oakley - Proceedings of the …, 2008 - National Acad Sciences
Loss of biological diversity because of extinction is one of the most pronounced changes to
the global environment. For several decades, researchers have tried to understand how …
the global environment. For several decades, researchers have tried to understand how …
Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history
Phylogenetic information is increasingly being used to understand the assembly of biological
communities and ecological processes. However, commonly used metrics of phylogenetic …
communities and ecological processes. However, commonly used metrics of phylogenetic …
[HTML][HTML] A post-synaptic scaffold at the origin of the animal kingdom
Background The evolution of complex sub-cellular structures such as the synapse requires
the assembly of multiple proteins, each conferring added functionality to the integrated …
the assembly of multiple proteins, each conferring added functionality to the integrated …
Phylotranscriptomics to bring the understudied into the fold: monophyletic Ostracoda, fossil placement, and pancrustacean phylogeny
An ambitious, yet fundamental goal for comparative biology is to understand the evolutionary
relationships for all of life. However, many important taxonomic groups have remained …
relationships for all of life. However, many important taxonomic groups have remained …