User profiles for T. P. Michael

Todd P Michael

Salk Institute for Biological Studies
Verified email at salk.edu
Cited by 20557

Return of the Lemnaceae: Duckweed as a model plant system in the genomics and postgenomics era

…, I Schubert, S Sorrels, KS Sree, S Xu, TP Michael… - The Plant …, 2021 - academic.oup.com
The aquatic Lemnaceae family, commonly called duckweed, comprises some of the smallest
and fastest growing angiosperms known on Earth. Their tiny size, rapid growth by clonal …

Progress, challenges and the future of crop genomes

TP Michael, R VanBuren - Current opinion in plant biology, 2015 - Elsevier
Highlights • NGS speed and capacity enable over 100 published plant genomes. • Underserved
specialty and orphan crop genomic resources grow due to low cost NGS. • Double …

[HTML][HTML] Building near-complete plant genomes

TP Michael, R VanBuren - Current Opinion in Plant Biology, 2020 - Elsevier
Highlights • Long read sequencing has improved genome assembly by an order of
magnitude. • New genome assembly algorithms leverage long, error prone reads to untangle …

[HTML][HTML] The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

…, E Tong, H Tang, E Lyons, RE Paull, TP Michael… - Nature, 2008 - nature.com
Papaya, a fruit crop cultivated in tropical and subtropical regions, is known for its nutritional
benefits and medicinal applications. Here we report a 3× draft genome sequence of ‘SunUp’ …

[HTML][HTML] The genome of woodland strawberry (Fragaria vesca)

…, OR Crasta, RV Jensen, AC Allan, TP Michael… - Nature …, 2011 - nature.com
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant
system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to …

[PDF][PDF] 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

…, P Korte, C Lanz, CR Lee, D Meng, TP Michael… - Cell, 2016 - cell.com
… True Positives (TP) are positions where 1001G and WGA variants are … FP/(TP+FP), the
False Negative Rate is defined as FN/(FN+TP) and the True Positive Rate is defined as TP/(TP+FN…

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

…, A Litt, E Lyons, G Manning, T Maruyama, TP Michael… - science, 2011 - science.org
Vascular plants appeared ~410 million years ago, then diverged into several lineages of
which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We …

[HTML][HTML] Epigenomic diversity in a global collection of Arabidopsis thaliana accessions

…, P Korte, C Lanz, CR Lee, D Meng, TP Michael… - Cell, 2016 - cell.com
The epigenome orchestrates genome accessibility, functionality, and three-dimensional
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …

The genetic and epigenetic landscape of the Arabidopsis centromeres

…, MA Lysak, F Berger, A Bousios, TP Michael… - Science, 2021 - science.org
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …

[HTML][HTML] Network discovery pipeline elucidates conserved time-of-day–specific cis-regulatory modules

TP Michael, TC Mockler, G Breton, C McEntee… - PLoS …, 2008 - journals.plos.org
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms,
including higher plants. In this study, we describe a hypothesis-driven network discovery …