User profiles for T. P. Michael
Todd P MichaelSalk Institute for Biological Studies Verified email at salk.edu Cited by 20557 |
Return of the Lemnaceae: Duckweed as a model plant system in the genomics and postgenomics era
The aquatic Lemnaceae family, commonly called duckweed, comprises some of the smallest
and fastest growing angiosperms known on Earth. Their tiny size, rapid growth by clonal …
and fastest growing angiosperms known on Earth. Their tiny size, rapid growth by clonal …
Progress, challenges and the future of crop genomes
TP Michael, R VanBuren - Current opinion in plant biology, 2015 - Elsevier
Highlights • NGS speed and capacity enable over 100 published plant genomes. • Underserved
specialty and orphan crop genomic resources grow due to low cost NGS. • Double …
specialty and orphan crop genomic resources grow due to low cost NGS. • Double …
[HTML][HTML] Building near-complete plant genomes
TP Michael, R VanBuren - Current Opinion in Plant Biology, 2020 - Elsevier
Highlights • Long read sequencing has improved genome assembly by an order of
magnitude. • New genome assembly algorithms leverage long, error prone reads to untangle …
magnitude. • New genome assembly algorithms leverage long, error prone reads to untangle …
[HTML][HTML] The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
Papaya, a fruit crop cultivated in tropical and subtropical regions, is known for its nutritional
benefits and medicinal applications. Here we report a 3× draft genome sequence of ‘SunUp’ …
benefits and medicinal applications. Here we report a 3× draft genome sequence of ‘SunUp’ …
[HTML][HTML] The genome of woodland strawberry (Fragaria vesca)
The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant
system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to …
system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to …
[PDF][PDF] 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana
… True Positives (TP) are positions where 1001G and WGA variants are … FP/(TP+FP), the
False Negative Rate is defined as FN/(FN+TP) and the True Positive Rate is defined as TP/(TP+FN…
False Negative Rate is defined as FN/(FN+TP) and the True Positive Rate is defined as TP/(TP+FN…
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
Vascular plants appeared ~410 million years ago, then diverged into several lineages of
which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We …
which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We …
[HTML][HTML] Epigenomic diversity in a global collection of Arabidopsis thaliana accessions
…, P Korte, C Lanz, CR Lee, D Meng, TP Michael… - Cell, 2016 - cell.com
The epigenome orchestrates genome accessibility, functionality, and three-dimensional
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …
structure. Because epigenetic variation can impact transcription and thus phenotypes, it may …
The genetic and epigenetic landscape of the Arabidopsis centromeres
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …
[HTML][HTML] Network discovery pipeline elucidates conserved time-of-day–specific cis-regulatory modules
Correct daily phasing of transcription confers an adaptive advantage to almost all organisms,
including higher plants. In this study, we describe a hypothesis-driven network discovery …
including higher plants. In this study, we describe a hypothesis-driven network discovery …