[HTML][HTML] Nuclear stability and transcriptional directionality separate functionally distinct RNA species
…, LJ Core, J Bornholdt, M Boyd, T Heick Jensen… - Nature …, 2014 - nature.com
Mammalian genomes are pervasively transcribed, yielding a complex transcriptome with
high variability in composition and cellular abundance. Although recent efforts have identified …
high variability in composition and cellular abundance. Although recent efforts have identified …
Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes
S Lykke-Andersen, TH Jensen - Nature reviews Molecular cell biology, 2015 - nature.com
… programmed rearrangements of T cell receptor-β (TCRβ) alleles during T cell maturation. …
If the first rearrangement produces a functional TCRβ allele, T cell maturation continues (left)…
If the first rearrangement produces a functional TCRβ allele, T cell maturation continues (left)…
A blood–brain penetrant RNA-targeted small molecule triggers elimination of r(G4C2)exp in c9ALS/FTD via the nuclear RNA exosome
…, L Petrucelli, T Heick Jensen… - Proceedings of the …, 2022 - National Acad Sciences
… P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001, as determined by an Unpaired t test
… P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001, as determined by an Unpaired t test …
… P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001, as determined by an Unpaired t test …
Quality control of mRNA 3′-end processing is linked to the nuclear exosome
…, T McCarthy, M Rosbash, R Parker, TH Jensen - Nature, 2001 - nature.com
An emerging theme in messenger RNA metabolism is the coupling of nuclear pre-mRNA
processing events, which contributes to mRNA quality control 1 . Most eukaryotic mRNAs …
processing events, which contributes to mRNA quality control 1 . Most eukaryotic mRNAs …
[HTML][HTML] The MTR4 helicase recruits nuclear adaptors of the human RNA exosome using distinct arch-interacting motifs
…, J Basquin, M Sattler, T Heick Jensen… - Nature …, 2019 - nature.com
… The sequences were obtained from the UniProt database and aligned using the T-coffee
server 59 . b Protein co-precipitations by pull down assays. GST-tagged MTR4∆N was …
server 59 . b Protein co-precipitations by pull down assays. GST-tagged MTR4∆N was …
[PDF][PDF] Dealing with pervasive transcription
TH Jensen, A Jacquier, D Libri - Molecular cell, 2013 - cell.com
Eukaryotic genomes are pervasively transcribed. However, it is unclear how many newly
found RNAs have functions and how many are byproducts of functional, or spurious, …
found RNAs have functions and how many are byproducts of functional, or spurious, …
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities
…, C Dalager Vaagensø, T Heick Jensen… - Nucleic acids …, 2018 - academic.oup.com
… not associated with dCP enhancer potential (t-test, P < 1 × 10 −16 ), while hkCP enhancer-associated
transcribed DHSs were associated with the highest expression levels (t-test, P < 1 …
transcribed DHSs were associated with the highest expression levels (t-test, P < 1 …
[HTML][HTML] Temporal-iCLIP captures co-transcriptional RNA-protein interactions
…, A Bugai, S Granneman, T Heick Jensen - Nature …, 2023 - nature.com
Dynamic RNA-protein interactions govern the co-transcriptional packaging of RNA polymerase
II (RNAPII)-derived transcripts. Yet, our current understanding of this process in vivo …
II (RNAPII)-derived transcripts. Yet, our current understanding of this process in vivo …
Mapping domains of ARS2 critical for its RNA decay capacity
…, PK Andersen, T Heick Jensen - Nucleic Acids …, 2020 - academic.oup.com
ARS2 is a conserved protein centrally involved in both nuclear RNA productive and destructive
processes. To map features of ARS2 promoting RNA decay, we utilized two different …
processes. To map features of ARS2 promoting RNA decay, we utilized two different …
An atlas of active enhancers across human cell types and tissues
… CD19+ B-cells and CD8+ T-cells were isolated using the pluriBead system (huCD4/CD8
cascade and huCD19 single; PluriSelect). RNA was then extracted using the miRNeasy kit (…
cascade and huCD19 single; PluriSelect). RNA was then extracted using the miRNeasy kit (…