User profiles for T. Nakane
Takanori NakaneInstitute of Protein Research, Osaka University Verified email at protein.osaka-u.ac.jp Cited by 13162 |
JSmol and the Next‐Generation Web‐Based Representation of 3D Molecular Structure as Applied to Proteopedia
…, J Prilusky, Z Renjian, T Nakane… - Israel Journal of …, 2013 - Wiley Online Library
… and qualifying as a medical doctor, Nakane decided to enter a four-year … Over the last two
years, Nakane has been developing … Nakane also contributes to several open-source projects, …
years, Nakane has been developing … Nakane also contributes to several open-source projects, …
New tools for automated high-resolution cryo-EM structure determination in RELION-3
10.7554/eLife.42166.001 Here, we describe the third major release of RELION. CPU-based
vector acceleration has been added in addition to GPU support, which provides flexibility in …
vector acceleration has been added in addition to GPU support, which provides flexibility in …
Single-particle cryo-EM at atomic resolution
The three-dimensional positions of atoms in protein molecules define their structure and their
roles in biological processes. The more precisely atomic coordinates are determined, the …
roles in biological processes. The more precisely atomic coordinates are determined, the …
[HTML][HTML] Structures and distributions of SARS-CoV-2 spike proteins on intact virions
… T) or nsp3 (Abcam, ab181620; diluted 1:500 in PBS-T). Next, the membranes were washed
3 times in PBS-T… 1 h, washed again 3 times in PBS-T, incubated with western Lightning Plus-…
3 times in PBS-T… 1 h, washed again 3 times in PBS-T, incubated with western Lightning Plus-…
New tools for automated cryo-EM single-particle analysis in RELION-4.0
D Kimanius, L Dong, G Sharov, T Nakane… - Biochemical …, 2021 - portlandpress.com
… the right shows the value of the supervised threshold (t = T). … the right shows the value of the
supervised threshold (t = T). … on the right shows the value of the supervised threshold (t = T). …
supervised threshold (t = T). … on the right shows the value of the supervised threshold (t = T). …
Light-induced structural changes and the site of O= O bond formation in PSII caught by XFEL
…, F Akita, M Sugahara, M Kubo, Y Nakajima, T Nakane… - Nature, 2017 - nature.com
… -I, Continuum) to the sample at t = 0 ms and t = 10 ms (that is, the two flashes were separated
by 10 ms) for the pre-flashed samples, and t = 0 ms and t = 5 ms (separated by 5 ms) for the …
by 10 ms) for the pre-flashed samples, and t = 0 ms and t = 5 ms (separated by 5 ms) for the …
[PDF][PDF] Crystal structure of Cpf1 in complex with guide RNA and target DNA
… can explain the requirement of the third T in the 50-TTTN-30 … with the requirement of the
second T in the PAM. The 5-… consistent with the requirement of the first T in the PAM. The K548A …
second T in the PAM. The 5-… consistent with the requirement of the first T in the PAM. The K548A …
Structure of the medullary veins of the cerebral hemisphere and related disorders
…, A Fukusumi, T Miyasaka, H Kawai, T Nakane… - Radiographics, 2017 - pubs.rsna.org
Deep medullary veins drain into subependymal veins with four convergence zones and show
parallel distribution patterns adjacent to the body or inferior horn and a radial pattern in the …
parallel distribution patterns adjacent to the body or inferior horn and a radial pattern in the …
A three-dimensional movie of structural changes in bacteriorhodopsin
…, M Kubo, T Nakane, C Wickstrand, T Kimura, T Tanaka… - Science, 2016 - science.org
Bacteriorhodopsin (bR) is a light-driven proton pump and a model membrane transport protein.
We used time-resolved serial femtosecond crystallography at an x-ray free electron laser …
We used time-resolved serial femtosecond crystallography at an x-ray free electron laser …
[HTML][HTML] A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis
J Zivanov, T Nakane, SHW Scheres - IUCrJ, 2019 - scripts.iucr.org
A new method to estimate the trajectories of particle motion and the amount of cumulative
beam damage in electron cryo-microscopy (cryo-EM) single-particle analysis is presented. The …
beam damage in electron cryo-microscopy (cryo-EM) single-particle analysis is presented. The …