Translation efficiency is determined by both codon bias and folding energy

T Tuller, YY Waldman, M Kupiec… - Proceedings of the …, 2010 - National Acad Sciences
Synonymous mutations do not alter the protein produced yet can have a significant effect on
protein levels. The mechanisms by which this effect is achieved are controversial; although …

[PDF][PDF] Predicting cancer-specific vulnerability via data-driven detection of synthetic lethality

L Jerby-Arnon, N Pfetzer, YY Waldman, L McGarry… - Cell, 2014 - cell.com
Synthetic lethality occurs when the inhibition of two genes is lethal while the inhibition of
each single gene is not. It can be harnessed to selectively treat cancer by identifying inactive …

[HTML][HTML] Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks

O Magger, YY Waldman, E Ruppin, R Sharan - 2012 - journals.plos.org
The prioritization of candidate disease-causing genes is a fundamental challenge in the post-genomic
era. Current state of the art methods exploit a protein-protein interaction (PPI) …

Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer

K Yizhak, E Gaude, S Le Dévédec, YY Waldman… - Elife, 2014 - elifesciences.org
10.7554/eLife.03641.001 Utilizing molecular data to derive functional physiological models
tailored for specific cancer cells can facilitate the use of individually tailored therapies. To this …

[HTML][HTML] Accounting for eXentricities: analysis of the X chromosome in GWAS reveals X-linked genes implicated in autoimmune diseases

D Chang, F Gao, A Slavney, L Ma, YY Waldman… - PloS one, 2014 - journals.plos.org
Many complex human diseases are highly sexually dimorphic, suggesting a potential
contribution of the X chromosome to disease risk. However, the X chromosome has been …

Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages

YY Waldman, T Tuller, T Shlomi, R Sharan… - Nucleic acids …, 2010 - academic.oup.com
Various studies in unicellular and multicellular organisms have shown that codon bias plays
a significant role in translation efficiency (TE) by co-adaptation to the tRNA pool. Yet, in …

Selection for translation efficiency on synonymous polymorphisms in recent human evolution

YY Waldman, T Tuller, A Keinan… - Genome biology and …, 2011 - academic.oup.com
Synonymous mutations are considered to be “silent” as they do not affect protein sequence.
However, different silent codons have different translation efficiency (TE), which raises the …

[HTML][HTML] Body mass index and birth weight improve polygenic risk score for type 2 diabetes

A Moldovan, YY Waldman, N Brandes… - Journal of personalized …, 2021 - mdpi.com
One of the major challenges in the post-genomic era is elucidating the genetic basis of human
diseases. In recent years, studies have shown that polygenic risk scores (PRS), based on …

[HTML][HTML] The genetics of Bene Israel from India reveals both substantial Jewish and Indian ancestry

YY Waldman, A Biddanda, NR Davidson… - PLoS …, 2016 - journals.plos.org
The Bene Israel Jewish community from West India is a unique population whose history
before the 18 th century remains largely unknown. Bene Israel members consider themselves …

[HTML][HTML] The genetic history of Cochin Jews from India

YY Waldman, A Biddanda, M Dubrovsky, CL Campbell… - Human Genetics, 2016 - Springer
Cochin Jews form a small and unique community on the Malabar coast in southwest India.
While the arrival time of any putative Jewish ancestors of the community has been speculated …