User profiles for Z. J. Gartner

Zev J Gartner

Professor of Pharmaceutical Chemistry, University of California San Francisco
Verified email at ucsf.edu
Cited by 9497

[PDF][PDF] DoubletFinder: doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

CS McGinnis, LM Murrow, ZJ Gartner - Cell systems, 2019 - cell.com
Single-cell RNA sequencing (scRNA-seq) data are commonly affected by technical artifacts
known as "doublets," which limit cell throughput and lead to spurious biological conclusions. …

Directing the assembly of spatially organized multicomponent tissues from the bottom up

JS Liu, ZJ Gartner - Trends in cell biology, 2012 - cell.com
The complexity of the human body derives from numerous modular building blocks
assembled hierarchically across multiple length scales. These building blocks, spanning sizes …

DNA-templated organic synthesis and selection of a library of macrocycles

ZJ Gartner, BN Tse, R Grubina, JB Doyon, TM Snyder… - Science, 2004 - science.org
The translation of nucleic acid libraries into corresponding synthetic compounds would
enable selection and amplification principles to be applied to man-made molecules. We used …

Dissecting the stem cell niche with organoid models: an engineering-based approach

LM Murrow, RJ Weber, ZJ Gartner - Development, 2017 - journals.biologists.com
For many tissues, single resident stem cells grown in vitro under appropriate three-dimensional
conditions can produce outgrowths known as organoids. These tissues recapitulate …

MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices

…, JS Weissman, Z Werb, ED Chow, ZJ Gartner - Nature …, 2019 - nature.com
Sample multiplexing facilitates scRNA-seq by reducing costs and identifying artifacts such as
cell doublets. However, universal and scalable sample barcoding strategies have not been …

[PDF][PDF] Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution

…, CS McGinnis, DM Patterson, ZJ Gartner… - Cell, 2022 - cell.com
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic alterations
that enable uncontrolled growth and expansion to neighboring and distal tissues. The …

Opportunities for organoids as new models of aging

JL Hu, ME Todhunter, MA LaBarge, ZJ Gartner - Journal of Cell Biology, 2018 - rupress.org
ZJ Gartner is a Chan Zuckerberg Biohub investigator and is supported by an Era of Hope
Scholar Award (BC123047), the Center for Cellular Construction (NSF DBI-1548297), and the …

The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules

ZJ Gartner, DR Liu - Journal of the American Chemical Society, 2001 - ACS Publications
Despite their limited chemical functionality, proteins and nucleic acids dominate the solutions
to many complex chemical problems because they can be evolved through iterated cycles …

Programmed assembly of 3-dimensional microtissues with defined cellular connectivity

ZJ Gartner, CR Bertozzi - Proceedings of the National …, 2009 - National Acad Sciences
Multicellular organs comprise differentiated cell types with discrete yet interdependent functions.
The cells' spatial arrangements and interconnectivities, both critical elements of higher-…

[HTML][HTML] Abseq: Ultrahigh-throughput single cell protein profiling with droplet microfluidic barcoding

P Shahi, SC Kim, JR Haliburton, ZJ Gartner… - Scientific reports, 2017 - nature.com
Proteins are the primary effectors of cellular function, including cellular metabolism, structural
dynamics, and information processing. However, quantitative characterization of proteins …