Computational correction of copy number effect improves specificity of CRISPR–Cas9 essentiality screens in cancer cells
…, T Wu, DC Hawes, VA Zhivich, MR Wyatt, Z Kalani… - Nature …, 2017 - nature.com
… dependency was calculated as the difference between a single cell line's dependency
score for a given gene and the mean score for that gene across all lines screened, then Z-score-…
score for a given gene and the mean score for that gene across all lines screened, then Z-score-…
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens
…, ME Sullender, E Hartenian, Z Kalani… - Nature …, 2018 - nature.com
Combinatorial genetic screening using CRISPR–Cas9 is a useful approach to uncover
redundant genes and to explore complex gene networks. However, current methods suffer from …
redundant genes and to explore complex gene networks. However, current methods suffer from …
Noncanonical open reading frames encode functional proteins essential for cancer cell survival
…, G Botta, NJ Lyons, A Goodale, Z Kalani… - Nature …, 2021 - nature.com
… well were converted to robust z-scores by z-scoring gene expression relative to corresponding
expression across the entire plate population; these z-scored differential expression gene …
expression across the entire plate population; these z-scored differential expression gene …
[PDF][PDF] A compendium of genetic modifiers of mitochondrial dysfunction reveals intra-organelle buffering
… Scatterplots of Z scores showing knockouts (KOs) that are enriched or depleted in each
drug versus DMSO are shown. KOs are scored by DZDrug = (ZDrug À ZDMSO)/O2 (see STAR …
drug versus DMSO are shown. KOs are scored by DZDrug = (ZDrug À ZDMSO)/O2 (see STAR …
[HTML][HTML] PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
… on their expression Z-score in Ppm1d gRNA IUE DMG (n = 3 tumors). Top genes with
expression Z-score > 15 are depicted. B Venn diagram showing highly expressed genes (Z-score …
expression Z-score > 15 are depicted. B Venn diagram showing highly expressed genes (Z-score …
BAF complex maintains glioma stem cells in pediatric H3K27M glioma
…, MA Quezada, ACJ Stanton, M Wyatt, Z Kalani… - Cancer discovery, 2022 - AACR
Epigenetic dysregulation is at the core of H3K27M-glioma tumorigenesis. Here, we identify
the BRG1–BAF complex as a critical regulator of enhancer and transcription factor …
the BRG1–BAF complex as a critical regulator of enhancer and transcription factor …
Genome-wide pooled CRISPR screening in neurospheres
T Abid, AB Goodale, Z Kalani, M Wyatt, EM Gonzalez… - Nature protocols, 2023 - nature.com
Spheroid culture systems have allowed in vitro propagation of cells unable to grow in
canonical cell culturing conditions, and may capture cellular contexts that model tumor growth …
canonical cell culturing conditions, and may capture cellular contexts that model tumor growth …
[PDF][PDF] Comparison of the effect of water vs. povidone-iodine solution for periurethral cleaning in women requiring an indwelling catheter prior to gynecologic surgery.
K Nasiriani, Z Kalani, F Farnia, M Motavasslian… - Urologic …, 2009 - researchgate.net
A ck n ow ledgments: We would like to thank the University of Shahid Sadoghi for their coope
ration in this study. We also thank the nursing and midwife ry staff of the Shahid Sadooghi …
ration in this study. We also thank the nursing and midwife ry staff of the Shahid Sadooghi …
[PDF][PDF] The effect of family guided visits on the level of consciousness in traumatic brain injury
Z Kalani, P Pourkermanian… - Journal of Biology and …, 2016 - academia.edu
Sensory stimulation in patients with a decreased level of consciousness in the intensive
care unit (ICU) can affect the level of consciousness. Thus, this study was conducted to …
care unit (ICU) can affect the level of consciousness. Thus, this study was conducted to …
[HTML][HTML] Correlation between moral distress and clinical competence in COVID-19 ICU nurses
Z Kalani, M Barkhordari-Sharifabad, N Chehelmard - BMC nursing, 2023 - Springer
… Wherein N is the desired sample size, \({Z}_{\alpha }\) is the standard normal score of 95%
of confidence interval = 1.96, \({Z}_{\beta }\)= statistical power at 80%, which is 0.84 and \(c=0\)…
of confidence interval = 1.96, \({Z}_{\beta }\)= statistical power at 80%, which is 0.84 and \(c=0\)…