[PDF][PDF] Comprehensive pan-genomic characterization of adrenocortical carcinoma

…, AC Latronico, BB Mendonca, M Sibony, Z Sanborn… - Cancer cell, 2016 - cell.com
We describe a comprehensive genomic characterization of adrenocortical carcinoma (ACC).
Using this dataset, we expand the catalogue of known ACC driver genes to include …

Loss-of-function mutations in Notch receptors in cutaneous and lung squamous cell carcinoma

NJ Wang, Z Sanborn, KL Arnett… - Proceedings of the …, 2011 - National Acad Sciences
Squamous cell carcinomas (SCCs) are one of the most frequent forms of human malignancy,
but, other than TP53 mutations, few causative somatic aberrations have been identified. …

[HTML][HTML] Modeling precision treatment of breast cancer

…, LM Heiser, NJ Wang, OM Enache, Z Sanborn… - Genome biology, 2013 - Springer
Background First-generation molecular profiles for human breast cancers have enabled the
identification of features that can predict therapeutic response; however, little is known about …

[PDF][PDF] A distinct DNA methylation shift in a subset of glioma CpG island methylator phenotypes during tumor recurrence

…, A Iavarone, J Snyder, A deCarvalho, Z Sanborn… - Cell reports, 2018 - cell.com
Glioma diagnosis is based on histomorphology and grading; however, such classification
does not have predictive clinical outcome after glioblastomas have developed. To date, no …

[HTML][HTML] The somatic genomic landscape of glioblastoma

…, SR Salama, S Zheng, D Chakravarty, JZ Sanborn… - cell, 2013 - cell.com
We describe the landscape of somatic genomic alterations based on multidimensional and
comprehensive characterization of more than 500 glioblastoma tumors (GBMs). We identify …

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

CJ Vaske, SC Benz, JZ Sanborn, D Earl, C Szeto… - …, 2010 - academic.oup.com
… Zachary Sanborn … where Z is the normalization constant introduced in Equation (1). Similarly,
the probability that x i is in state a along with all of the observations made for the patient is: …

[HTML][HTML] Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study

D Sirohi, C Vaske, Z Sanborn, SC Smith, MD Don… - Modern Pathology, 2018 - Elsevier
In recent years, there has been increased interest in carcinomas of the urologic tract, that
demonstrate association with the polyoma virus BK arising in immunosuppressed individuals, …

Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway

…, M Garrido, T Botton, E Talevich, I Yeh, JZ Sanborn… - Nature …, 2015 - nature.com
Desmoplastic melanoma is an uncommon variant of melanoma with sarcomatous histology,
distinct clinical behavior and unknown pathogenesis 1 , 2 , 3 . We performed low-coverage …

The UCSC cancer genomics browser

J Zhu, JZ Sanborn, S Benz, C Szeto, F Hsu, RM Kuhn… - Nature …, 2009 - nature.com
To the Editor: Advances in high-throughput genomics have reshaped the cancer research
landscape. Complete characterization of genomic, epigenomic and transcriptomic changes of …

Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination

JZ Sanborn, J Chung, E Purdom… - Proceedings of the …, 2015 - National Acad Sciences
Melanoma is difficult to treat once it becomes metastatic. However, the precise ancestral
relationship between primary tumors and their metastases is not well understood. We performed …