[HTML][HTML] Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

A Gouin, A Bretaudeau, K Nam, S Gimenez, JM Aury… - Scientific reports, 2017 - nature.com
Emergence of polyphagous herbivorous insects entails significant adaptation to recognize,
detoxify and digest a variety of host-plants. Despite of its biological and practical importance - …

[PDF][PDF] Community-driven data analysis training for biology

…, D Baker, V Bhardwaj, C Blank, A Bretaudeau… - Cell systems, 2018 - cell.com
The primary problem with the explosion of biomedical datasets is not the data, not computational
resources, and not the required storage space, but the general lack of trained and …

[HTML][HTML] Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

…, F Legeai, ST Mugford, P Baa-Puyoulet, A Bretaudeau… - Genome biology, 2017 - Springer
Background The prevailing paradigm of host-parasite evolution is that arms races lead to
increasing specialisation via genetic adaptation. Insect herbivores are no exception and the …

Tools and data services registry: a community effort to document bioinformatics resources

…, K Berka, D Bolser, T Booth, A Bretaudeau… - Nucleic acids …, 2016 - academic.oup.com
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to
improvement in human health, agriculture and the environment. In support of these …

[HTML][HTML] The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

…, L Bao, M Barberà, M Bouallègue, A Bretaudeau… - BMC biology, 2020 - Springer
Background Although native to North America, the invasion of the aphid-like grape phylloxera
Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the …

[HTML][HTML] Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

…, E Persyn, JM Aury, B Noel, A Bretaudeau… - Communications …, 2021 - nature.com
Endogenous viruses form an important proportion of eukaryote genomes and a source of
novel functions. How large DNA viruses integrated into a genome evolve when they confer a …

Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species

A Belcour, C Frioux, M Aite, A Bretaudeau… - Elife, 2020 - elifesciences.org
To capture the functional diversity of microbiota, one must identify metabolic functions and
species of interest within hundreds or thousands of microorganisms. We present …

[HTML][HTML] Adaptation by copy number variation increases insecticide resistance in the fall armyworm

…, CA Blanco, S Hänniger, A Bretaudeau… - Communications …, 2020 - nature.com
Understanding the genetic basis of insecticide resistance is a key topic in agricultural ecology.
The adaptive evolution of multi-copy detoxification genes has been interpreted as a cause …

[HTML][HTML] The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes

M Ouedraogo, C Bettembourg, A Bretaudeau, O Sallou… - PloS one, 2012 - journals.plos.org
Background There has been a surge in studies linking genome structure and gene expression,
with special focus on duplicated genes. Although initially duplicated from the same …

[HTML][HTML] Galaxy Training: A powerful framework for teaching!

…, PD Jagtap, T Wollmann, A Bretaudeau… - PLoS computational …, 2023 - journals.plos.org
There is an ongoing explosion of scientific datasets being generated, brought on by recent
technological advances in many areas of the natural sciences. As a result, the life sciences …