User profiles for A. Godzik
Adam GodzikProfessor, University of California Riverside School of Medicine Verified email at medsch.ucr.edu Cited by 54224 |
[HTML][HTML] Protein tyrosine phosphatases in the human genome
Tyrosine phosphorylation is catalyzed by protein tyrosine kinases, which are represented by
90 genes in the human genome. Here, we present the set of 107 genes in the human …
90 genes in the human genome. Here, we present the set of 107 genes in the human …
[HTML][HTML] Defining the risk of SARS-CoV-2 variants on immune protection
The global emergence of many severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
variants jeopardizes the protective antiviral immunity induced after infection or …
variants jeopardizes the protective antiviral immunity induced after infection or …
Mitochondrial fission in apoptosis, neurodegeneration and aging
E Bossy-Wetzel, MJ Barsoum, A Godzik… - Current opinion in cell …, 2003 - Elsevier
A decline in mitochondrial function is well recognized in neurodegenerative diseases and
aging, and is thought to play a causal role in their biology. Unfortunately, the molecular basis …
aging, and is thought to play a causal role in their biology. Unfortunately, the molecular basis …
S-nitrosylation of Drp1 mediates β-amyloid-related mitochondrial fission and neuronal injury
Mitochondria continuously undergo two opposing processes, fission and fusion. The
disruption of this dynamic equilibrium may herald cell injury or death and may contribute to …
disruption of this dynamic equilibrium may herald cell injury or death and may contribute to …
[HTML][HTML] The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
Metagenomics projects based on shotgun sequencing of populations of micro-organisms
yield insight into protein families. We used sequence similarity clustering to explore proteins …
yield insight into protein families. We used sequence similarity clustering to explore proteins …
Clustering of highly homologous sequences to reduce the size of large protein databases
We present a fast and flexible program for clustering large protein databases at different
sequence identity levels. It takes less than 2 h for the all-against-all sequence comparison and …
sequence identity levels. It takes less than 2 h for the all-against-all sequence comparison and …
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
Cephalochordates, urochordates, and vertebrates evolved from a common ancestor over
520 million years ago. To improve our understanding of chordate evolution and the origin of …
520 million years ago. To improve our understanding of chordate evolution and the origin of …
Shotgun metaproteomics of the human distal gut microbiota
…, AL Russell, M Shah, A Godzik… - The ISME …, 2009 - academic.oup.com
The human gut contains a dense, complex and diverse microbial community, comprising the
gut microbiome. Metagenomics has recently revealed the composition of genes in the gut …
gut microbiome. Metagenomics has recently revealed the composition of genes in the gut …
[PDF][PDF] Flexible structure alignment by chaining aligned fragment pairs allowing twists
Motivation: Protein structures are flexible and undergo structural rearrangements as part of
their function, and yet most existing protein structure comparison methods treat them as rigid …
their function, and yet most existing protein structure comparison methods treat them as rigid …
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Motivation: In 2001 and 2002, we published two papers (Bioinformatics, 17, 282–283,
Bioinformatics, 18, 77–82) describing an ultrafast protein sequence clustering program called cd-…
Bioinformatics, 18, 77–82) describing an ultrafast protein sequence clustering program called cd-…