User profiles for A. Stamatakis

Alexandros Stamatakis

- Verified email at ics.forth.gr - Cited by 96452

Alice Stamatakis

- Verified email at email.unc.edu - Cited by 5249

[HTML][HTML] Eleven grand challenges in single-cell data science

…, A Mahfouz, L Pinello, P Skums, A Stamatakis… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

[HTML][HTML] The iPlant collaborative: cyberinfrastructure for plant biology

…, BS Manjunath, V Tannen, A Stamatakis… - Frontiers in plant …, 2011 - frontiersin.org
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF)
funded project that aims to create an innovative, comprehensive, and foundational …

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

A Stamatakis - Bioinformatics, 2014 - academic.oup.com
Motivation: Phylogenies are increasingly used in all fields of medical and biological research.
Moreover, because of the next-generation sequencing revolution, datasets used for …

Understanding angiosperm diversification using small and large phylogenetic trees

SA Smith, JM Beaulieu, A Stamatakis… - American journal of …, 2011 - Wiley Online Library
How will the emerging possibility of inferring ultra‐large phylogenies influence our ability to
identify shifts in diversification rate? For several large angiosperm clades (Angiospermae, …

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

A Stamatakis - Bioinformatics, 2006 - academic.oup.com
RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance computing)
is a sequential and parallel program for inference of large phylogenies with maximum …

Whole-genome analyses resolve early branches in the tree of life of modern birds

…, H Ellegren, P Alström, SV Edwards, A Stamatakis… - Science, 2014 - science.org
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …

Phylogenomics resolves the timing and pattern of insect evolution

…, K Sekiya, S Shimizu, A Slipinski, A Stamatakis… - Science, 2014 - science.org
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein-…

Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking

GD Stuber, DR Sparta, AM Stamatakis… - nature, 2011 - nature.com
The basolateral amygdala (BLA) has a crucial role in emotional learning irrespective of
valence 1 , 2 , 3 , 4 , 5 , 21 , 22 , 23 . The BLA projection to the nucleus accumbens (NAc) is …

Assessing the root of bilaterian animals with scalable phylogenomic methods

A Hejnol, M Obst, A Stamatakis… - … of the Royal …, 2009 - royalsocietypublishing.org
A clear picture of animal relationships is a prerequisite to understand how the morphological
and ecological diversity of animals evolved over time. Among others, the placement of the …

Distinct extended amygdala circuits for divergent motivational states

JH Jennings, DR Sparta, AM Stamatakis, RL Ung… - Nature, 2013 - nature.com
The co-morbidity of anxiety and dysfunctional reward processing in illnesses such as addiction
1 and depression 2 suggests that common neural circuitry contributes to these disparate …