[HTML][HTML] Eleven grand challenges in single-cell data science
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …
[HTML][HTML] The iPlant collaborative: cyberinfrastructure for plant biology
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF)
funded project that aims to create an innovative, comprehensive, and foundational …
funded project that aims to create an innovative, comprehensive, and foundational …
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
A Stamatakis - Bioinformatics, 2014 - academic.oup.com
Motivation: Phylogenies are increasingly used in all fields of medical and biological research.
Moreover, because of the next-generation sequencing revolution, datasets used for …
Moreover, because of the next-generation sequencing revolution, datasets used for …
Understanding angiosperm diversification using small and large phylogenetic trees
How will the emerging possibility of inferring ultra‐large phylogenies influence our ability to
identify shifts in diversification rate? For several large angiosperm clades (Angiospermae, …
identify shifts in diversification rate? For several large angiosperm clades (Angiospermae, …
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
A Stamatakis - Bioinformatics, 2006 - academic.oup.com
RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance computing)
is a sequential and parallel program for inference of large phylogenies with maximum …
is a sequential and parallel program for inference of large phylogenies with maximum …
Whole-genome analyses resolve early branches in the tree of life of modern birds
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
Phylogenomics resolves the timing and pattern of insect evolution
…, K Sekiya, S Shimizu, A Slipinski, A Stamatakis… - Science, 2014 - science.org
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein-…
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein-…
Excitatory transmission from the amygdala to nucleus accumbens facilitates reward seeking
The basolateral amygdala (BLA) has a crucial role in emotional learning irrespective of
valence 1 , 2 , 3 , 4 , 5 , 21 , 22 , 23 . The BLA projection to the nucleus accumbens (NAc) is …
valence 1 , 2 , 3 , 4 , 5 , 21 , 22 , 23 . The BLA projection to the nucleus accumbens (NAc) is …
Assessing the root of bilaterian animals with scalable phylogenomic methods
A clear picture of animal relationships is a prerequisite to understand how the morphological
and ecological diversity of animals evolved over time. Among others, the placement of the …
and ecological diversity of animals evolved over time. Among others, the placement of the …
Distinct extended amygdala circuits for divergent motivational states
The co-morbidity of anxiety and dysfunctional reward processing in illnesses such as addiction
1 and depression 2 suggests that common neural circuitry contributes to these disparate …
1 and depression 2 suggests that common neural circuitry contributes to these disparate …