User profiles for B. P. Bowen

Ben Bowen

Research Scientist, Lawrence Berkeley National Lab
Verified email at lbl.gov
Cited by 8517

Dealing with the unknown: metabolomics and metabolite atlases

BP Bowen, TR Northen - Journal of the American Society for Mass …, 2010 - Springer
Metabolomics is the comprehensive profiling of the small molecule composition of a
biological sample. Since metabolites are often the indirect products of gene expression, this …

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

…, S Shi, H Cho, U Karaoz, D Loqué, BP Bowen… - Nature …, 2018 - nature.com
Like all higher organisms, plants have evolved in the context of a microbial world, shaping
both their evolution and their contemporary ecology. Interactions between plant roots and soil …

Mass spectrometry—based metabolomics, analysis of metabolite-protein interactions, and imaging

DY Lee, BP Bowen, TR Northen - Biotechniques, 2010 - Future Science
Our understanding of biology has been greatly improved through recent developments in
mass spectrometry, which is providing detailed information on protein and metabolite …

Deciphering microbial interactions in synthetic human gut microbiome communities

…, G Fisher, RH Hsu, R Lau, BP Bowen… - Molecular systems …, 2018 - embopress.org
bp of the V3–V4 variable region of the 16S rRNA gene. The set of 64 unique forward (6 bp)
and reverse (8 bp) … loaded on the Illumina MiSeq platform for 300 bp paired‐end sequencing. …

Widespread adenine N6-methylation of active genes in fungi

…, A Kuo, A Salamov, SR Ahrendt, R Lau, BP Bowen… - Nature …, 2017 - nature.com
… MACs included in this analysis were a minimum of 100 bp in length, expression was normalized
to the genome with the lowest number of RNA-seq bases mapped and a minimum cutoff …

Proteomics analysis of human skeletal muscle reveals novel abnormalities in obesity and type 2 diabetes

H Hwang, BP Bowen, N Lefort, CR Flynn… - Diabetes, 2010 - Am Diabetes Assoc
OBJECTIVE Insulin resistance in skeletal muscle is an early phenomenon in the pathogenesis
of type 2 diabetes. Studies of insulin resistance usually are highly focused. However, …

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

…, SD Axen, PM Shih, NJ Bouskill, BP Bowen… - The ISME …, 2013 - academic.oup.com
Biological soil crusts (BSCs) cover extensive portions of the earth’s deserts. In order to survive
desiccation cycles and utilize short periods of activity during infrequent precipitation, crust …

[HTML][HTML] Exometabolite niche partitioning among sympatric soil bacteria

…, UN Da Rocha, R Chakraborty, BP Bowen… - Nature …, 2015 - nature.com
Soils are arguably the most microbially diverse ecosystems. Physicochemical properties have
been associated with the maintenance of this diversity. Yet, the role of microbial substrate …

Untargeted soil metabolomics methods for analysis of extractable organic matter

TL Swenson, S Jenkins, BP Bowen… - Soil Biology and …, 2015 - Elsevier
The cycling of soil organic matter (SOM) by microorganisms is a critical component of the
global carbon cycle but remains poorly understood. There is an emerging view that much of …

[HTML][HTML] Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

…, U Karaoz, JM Swenson, BP Bowen… - Nature …, 2018 - nature.com
Metagenomic sequencing provides a window into microbial community structure and metabolic
potential; however, linking these data to exogenous metabolites that microorganisms …