User profiles for G. Fudenberg

Geoffrey Fudenberg

USC
Verified email at usc.edu
Cited by 19825

Higher-order chromatin structure: bridging physics and biology

G Fudenberg, LA Mirny - Current opinion in genetics & development, 2012 - Elsevier
Advances in microscopy and genomic techniques have provided new insight into spatial
chromatin organization inside of the nucleus. In particular, chromosome conformation capture …

Ultrahigh electron mobility in suspended graphene

…, KJ Sikes, Z Jiang, M Klima, G Fudenberg… - Solid state …, 2008 - Elsevier
We have achieved mobilities in excess of 200,000 cm 2 V −1 s −1 at electron densities of ∼2
×10 11 cm −2 by suspending single layer graphene. Suspension ∼150 nm above a Si/SiO …

[PDF][PDF] Formation of chromosomal domains by loop extrusion

G Fudenberg, M Imakaev, C Lu, A Goloborodko… - Cell reports, 2016 - cell.com
Fudenberg et al. propose that TADs emerge as a consequence of loop extrusion limited by
boundary elements. The authors use polymer simulations and genomic analyses to identify …

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

M Imakaev, G Fudenberg, RP McCord, N Naumova… - Nature …, 2012 - nature.com
Extracting biologically meaningful information from chromosomal interactions obtained with
genome-wide chromosome conformation capture (3C) analyses requires the elimination of …

Organization of the mitotic chromosome

N Naumova, M Imakaev, G Fudenberg, Y Zhan… - Science, 2013 - science.org
Mitotic chromosomes are among the most recognizable structures in the cell, yet for over a
century their internal organization remains largely unsolved. We applied chromosome …

Two independent modes of chromatin organization revealed by cohesin removal

…, A Goloborodko, A Pekowska, G Fudenberg… - Nature, 2017 - nature.com
Imaging and chromosome conformation capture studies have revealed several layers of
chromosome organization, including segregation into megabase-sized active and inactive …

[HTML][HTML] Modeling chromosomes: Beyond pretty pictures

MV Imakaev, G Fudenberg, LA Mirny - FEBS letters, 2015 - Elsevier
Recently, Chromosome Conformation Capture (3C) based experiments have highlighted
the importance of computational models for the study of chromosome organization. In this …

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

…, B Bintu, JR Moffitt, S Wang, BJ Beliveau, G Fudenberg… - Nature, 2016 - nature.com
… domains, we determined the radius of gyration (R g ), defined as the root-mean square …
Power-law scaling was also observed for R g as a function of L, that is, R g ∝ L c , with the …

[PDF][PDF] Chromatin organization by an interplay of loop extrusion and compartmental segregation

J Nuebler, G Fudenberg, M Imakaev, N Abdennur… - Biophysical …, 2018 - cell.com
Eukaryotic chromatin, is far from being simply a randomly arranged polymer in the cell nucleus.
Rather, Hi-C and imaging reveal a high degree of spatial organization on various length …

Heterochromatin drives compartmentalization of inverted and conventional nuclei

…, H Leonhardt, B Joffe, J Dekker, G Fudenberg… - Nature, 2019 - nature.com
The nucleus of mammalian cells displays a distinct spatial segregation of active euchromatic
and inactive heterochromatic regions of the genome 1 , 2 . In conventional nuclei, …