User profiles for G. Koudelka

Gerald Koudelka

University at buffalo
Verified email at buffalo.edu
Cited by 2080

[HTML][HTML] Shiga toxin: expression, distribution, and its role in the environment

SA Mauro, GB Koudelka - Toxins, 2011 - mdpi.com
In this review, we highlight recent work that has increased our understanding of the production
and distribution of Shiga toxin in the environment. Specifically, we review studies that …

Shiga Toxin as a Bacterial Defense against a Eukaryotic Predator, Tetrahymena thermophila

W Lainhart, G Stolfa, GB Koudelka - Journal of bacteriology, 2009 - Am Soc Microbiol
Bacterially derived exotoxins kill eukaryotic cells by inactivating factors and/or pathways that
are universally conserved among eukaryotic organisms. The genes that encode these …

Indirect Readout of DNA Sequence by Proteins: The Roles of DNA Sequence‐Dependent Intrinsic and Extrinsic Forces

GB Koudelka, SA Mauro, M Ciubotaru - Progress in nucleic acid research …, 2006 - Elsevier
… bonds with the bases of a conserved GG‐A sequence, but the … bending, correlated with the
A/T vs G/C content of the DNA in … For example, inserting G/C‐rich sequences into the binding …

Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro

GB Koudelka, SC Harrison, M Ptashne - Nature, 1987 - nature.com
The repressor of phage 434 binds to six operator sites on the phage chromosome 1–3 . A
comparison of the sequences of these 14-base-pair (bp) operator sites 3 reveals a striking …

P22 c2 repressor− operator complex: mechanisms of direct and indirect readout

D Watkins, C Hsiao, KK Woods, GB Koudelka… - Biochemistry, 2008 - ACS Publications
… of the terminal base pairs is a G·C base pair and the other is an A·T base pair. The R-factor
and R free values as well as the difference density indicate a best fit with the G·C base pair in …

The T rojan H orse of the microbiological arms race: phage‐encoded toxins as a defence against eukaryotic predators

JW Arnold, GB Koudelka - Environmental microbiology, 2014 - Wiley Online Library
… We thank the members of the Koudelka lab and Drs Todd Hennessey and Steve Free of our
department for critical reading of the manuscript. We certify that there is no conflict of interest …

[HTML][HTML] Carriage of Shiga toxin phage profoundly affects Escherichia coli gene expression and carbon source utilization

…, M Berger, N Haarmann, U Dobrindt, GB Koudelka… - BMC genomics, 2019 - Springer
… Overnight cultures were diluted till OD 600 of 0.005 in LB medium (10 g/L tryptone, 5 g/L
yeast extract, 5 g/L NaCl) and cells were grown at 37 C, 180 rpm to an OD 600 of 0.4–0.6. After …

Effect of Salt Shock on Stability of λimm434 Lysogens

P Shkilnyj, GB Koudelka - Journal of bacteriology, 2007 - Am Soc Microbiol
… times by centrifugation at 4,000 × g for 5 min and resuspended in … g and the phage-containing
supernatant was sterilized by addition of chloroform, followed by centrifugation at 8,000 × g

DNA twisting and the affinity of bacteriophage 434 operator for bacteriophage 434 repressor.

GB Koudelka, P Harbury… - Proceedings of the …, 1988 - National Acad Sciences
… We determined the effect of changing base pairs 7 and 8 from TAAT to G C-C'G in the
presence of two sequence contexts at positions 6 and 9. Fig. shows that changing the TAAT base …

DNA twisting and the effects of non-contacted bases on affinity of 434 operator for 434 represser

GB Koudelka, P Carlson - Nature, 1992 - nature.com
… Although these four base pairs are not in contact with represser 4,5 , operators with A·T or
T·A base pairs at these positions bind represser more strongly than those bearing C·G or G·C …