Clustering with a genetically optimized approach
Describes a genetically guided approach to optimizing the hard (J/sub 1/) and fuzzy (J/sub m/)
c-means functionals used in cluster analysis. Our experiments show that a genetic …
c-means functionals used in cluster analysis. Our experiments show that a genetic …
Quantitative evaluation of automated skull‐stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location
C Fennema‐Notestine, IB Ozyurt, CP Clark… - Human brain …, 2006 - Wiley Online Library
Performance of automated methods to isolate brain from nonbrain tissues in magnetic
resonance (MR) structural images may be influenced by MR signal inhomogeneities, type of MR …
resonance (MR) structural images may be influenced by MR signal inhomogeneities, type of MR …
A technique for the deidentification of structural brain MR images
A Bischoff‐Grethe, IB Ozyurt, E Busa… - Human brain …, 2007 - Wiley Online Library
Due to the increasing need for subject privacy, the ability to deidentify structural MR images
so that they do not provide full facial detail is desirable. A program was developed that uses …
so that they do not provide full facial detail is desirable. A program was developed that uses …
[HTML][HTML] DATS, the data tag suite to enable discoverability of datasets
Today’s science increasingly requires effective ways to find and access existing datasets
that are distributed across a range of repositories. For researchers in the life sciences, …
that are distributed across a range of repositories. For researchers in the life sciences, …
Multisite reliability of cognitive BOLD data
Investigators perform multi-site functional magnetic resonance imaging studies to increase
statistical power, to enhance generalizability, and to improve the likelihood of sampling …
statistical power, to enhance generalizability, and to improve the likelihood of sampling …
[HTML][HTML] Establishing institutional scores with the rigor and transparency index: large-scale analysis of scientific reporting quality
Background Improving rigor and transparency measures should lead to improvements in
reproducibility across the scientific literature; however, the assessment of measures of …
reproducibility across the scientific literature; however, the assessment of measures of …
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines
… of Geneva, Geneva, Switzerland I Burak Ozyurt is in the Center for Research in Biological
Systems… I Burak Ozyurt: works as a consultant for SciCrunch. The other authors declare that no …
Systems… I Burak Ozyurt: works as a consultant for SciCrunch. The other authors declare that no …
[HTML][HTML] Federated web-accessible clinical data management within an extensible neuroimaging database
IB Ozyurt, DB Keator, D Wei, C Fennema-Notestine… - Neuroinformatics, 2010 - Springer
Managing vast datasets collected throughout multiple clinical imaging communities has
become critical with the ever increasing and diverse nature of datasets. Development of data …
become critical with the ever increasing and diverse nature of datasets. Development of data …
Bio-AnswerFinder: a system to find answers to questions from biomedical texts
IB Ozyurt, A Bandrowski, JS Grethe - Database, 2020 - academic.oup.com
The ever accelerating pace of biomedical research results in corresponding acceleration in
the volume of biomedical literature created. Since new research builds upon existing …
the volume of biomedical literature created. Since new research builds upon existing …
On the effectiveness of small, discriminatively pre-trained language representation models for biomedical text mining
IB Ozyurt - bioRxiv, 2020 - biorxiv.org
Neural language representation models such as BERT [ 1 ] have recently shown state of the
art performance in downstream NLP tasks and bio-medical domain adaptation of BERT (Bio-…
art performance in downstream NLP tasks and bio-medical domain adaptation of BERT (Bio-…