Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae

…, C Audeon, E Bonnivard, JM Casacuberta… - … and genome research, 2005 - karger.com
Tnt1 elements are a superfamily of LTR-retrotransposons distributed in the Solanaceae plant
family and represent good model systems for studying regulatory and evolutionary controls …

Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes

JM Casacuberta, N Santiago - Gene, 2003 - Elsevier
Transposons are genetic elements that can move, and sometimes spread, within genomes,
and that constitute an important fraction of eukaryote genomes. Two types of transposons, …

Transposon insertions, structural variations, and SNPs contribute to the evolution of the melon genome

…, J Garcia-Mas, JM Casacuberta - Molecular biology …, 2015 - academic.oup.com
The availability of extensive databases of crop genome sequences should allow analysis of
crop variability at an unprecedented scale, which should have an important impact in plant …

The genome of melon (Cucumis melo L.)

…, G Roma, R Guigó, JM Casacuberta… - Proceedings of the …, 2012 - National Acad Sciences
We report the genome sequence of melon, an important horticultural crop worldwide. We
assembled 375 Mb of the double-haploid line DHL92, representing 83.3% of the estimated …

Genome-wide Analysis of the Emigrant Family of MITEs of Arabidopsis thaliana

…, JR Goñi, X Messeguer, JM Casacuberta - Molecular biology …, 2002 - academic.oup.com
Miniature inverted-repeat transposable elements (MITEs) are structurally similar to defective
class II elements, but their high copy number and the size and sequence conservation of …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of drastic …

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

…, J Garcia‐Mas, T Gabaldon, JM Casacuberta… - The Plant …, 2020 - Wiley Online Library
We sequenced the genome of the highly heterozygous almond Prunus dulcis cv. Texas
combining short‐ and long‐read sequencing. We obtained a genome assembly totaling 227.6 …

[HTML][HTML] An improved assembly and annotation of the melon (Cucumis melo L.) reference genome

…, W Sanseverino, P Puigdomènech, JM Casacuberta… - Scientific reports, 2018 - nature.com
We report an improved assembly (v3.6.1) of the melon (Cucumis melo L.) genome and a new
genome annotation (v4.0). The optical mapping approach allowed correcting the order and …

The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution

…, KFX Mayer, D Goodstein, JM Casacuberta… - The Plant …, 2018 - Wiley Online Library
The draft genome of the moss model, Physcomitrella patens, comprised approximately 2000
unordered scaffolds. In order to enable analyses of genome structure and evolution we …

The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses

…, C Mhiri, S Vernhettes, JM Casacuberta - Evolution and Impact of …, 1997 - Springer
… sequences (Vernhettes, Grandbastien & Casacuberta, submitted; see also Casacuberta et
aI., 1997, … A Grandbastien & JM Casacuberta, 1997. In vivo characterization of Tntl regulatory …