User profiles for J. Hoinka
Jan HoinkaNational Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda … Verified email at nih.gov Cited by 785 |
Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery
High-Throughput (HT) SELEX combines SELEX (Systematic Evolution of Ligands by
EXponential Enrichment), a method for aptamer discovery, with massively parallel sequencing …
EXponential Enrichment), a method for aptamer discovery, with massively parallel sequencing …
Identification of sequence–structure RNA binding motifs for SELEX-derived aptamers
… where n ij denotes the number of occurrences of the j-th letter in the i-th column and b j refers
to the background frequency of the j-th letter (Hertz and Stormo, 1999). While this measure …
to the background frequency of the j-th letter (Hertz and Stormo, 1999). While this measure …
Aptacluster–a method to cluster ht-selex aptamer pools and lessons from its application
Systematic Evolution of Ligands by EXponential Enrichment (SELEX) is a well established
experimental procedure to identify aptamers - synthetic single-stranded (ribo)nucleic …
experimental procedure to identify aptamers - synthetic single-stranded (ribo)nucleic …
[PDF][PDF] AptaTRACE elucidates RNA sequence-structure motifs from selection trends in HT-SELEX experiments
Aptamers, short RNA or DNA molecules that bind distinct targets with high affinity and specificity,
can be identified using high-throughput systematic evolution of ligands by exponential …
can be identified using high-throughput systematic evolution of ligands by exponential …
[HTML][HTML] AptaSUITE: a full-featured bioinformatics framework for the comprehensive analysis of aptamers from HT-SELEX experiments
The capability of producing and efficiently processing big data has revolutionized virtually
every field of science and technology and has enabled the analysis of experimental results at …
every field of science and technology and has enabled the analysis of experimental results at …
Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment
… Mapping these mutations to the predicted secondary structure (Figure 4C) of the #411-J
aptamer did not provide a suitable explanation as to why one but not the other mutation caused …
aptamer did not provide a suitable explanation as to why one but not the other mutation caused …
Highly Constrained Bicyclic Scaffolds for the Discovery of Protease-Stable Peptides via mRNA Display
… We also thank J. Sheldon and S. Richardson for providing scientific insight. … (TTX)-sensitive
and TTX-resistant sodium channels in mammalian sensory neurons J. Biol. Chem. …
and TTX-resistant sodium channels in mammalian sensory neurons J. Biol. Chem. …
[HTML][HTML] A 2′ FY-RNA motif defines an aptamer for Ebolavirus secreted protein
With properties such as stability to long-term storage and amenability to repetitive use, nucleic
acid aptamers are compatible with many sensing/transducing platforms intended for use …
acid aptamers are compatible with many sensing/transducing platforms intended for use …
[HTML][HTML] Immunotherapy using IgE or CAR T cells for cancers expressing the tumor antigen SLC3A2
…, A Di Meo, S Mele, G Chiaruttini, J Hoinka… - … for ImmunoTherapy of …, 2021 - ncbi.nlm.nih.gov
Background Cancer immunotherapy with monoclonal antibodies and chimeric antigen receptor
(CAR) T cell therapies can benefit from selection of new targets with high levels of tumor …
(CAR) T cell therapies can benefit from selection of new targets with high levels of tumor …
Direct, competitive comparison of linear, monocyclic, and bicyclic libraries using mRNA display
DE Hacker, NA Abrigo, J Hoinka… - ACS Combinatorial …, 2020 - ACS Publications
Peptide macrocyclization is typically associated with the development of higher affinity and
more protease stable protein ligands, and, as such, is an important tool in peptide drug …
more protease stable protein ligands, and, as such, is an important tool in peptide drug …