User profiles for J. O'Rawe

Jonathan F. O'Rawe

National Institutes of Health
Verified email at nih.gov
Cited by 178

[HTML][HTML] Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing

J O'Rawe, T Jiang, G Sun, Y Wu, W Wang, J Hu… - Genome medicine, 2013 - Springer
Background To facilitate the clinical implementation of genomic medicine by next-generation
sequencing, it will be critically important to obtain accurate and consistent variant calls on …

Accurate de novo and transmitted indel detection in exome-capture data using microassembly

G Narzisi, JA O'rawe, I Iossifov, H Fang, Y Lee… - Nature …, 2014 - nature.com
We present an open-source algorithm, Scalpel ( http://scalpel.sourceforge.net/ ), which combines
mapping and assembly for sensitive and specific discovery of insertions and deletions (…

[PDF][PDF] TAF1 variants are associated with dysmorphic features, intellectual disability, and neurological manifestations

JA O'Rawe, Y Wu, MJ Dörfel, AF Rope, PYB Au… - The American Journal of …, 2015 - cell.com
We describe an X-linked genetic syndrome associated with mutations in TAF1 and
manifesting with global developmental delay, intellectual disability (ID), characteristic facial …

Indel variant analysis of short-read sequencing data with Scalpel

…, JA O'rawe, Y Wu, LT Jimenez Barron, J Rosenbaum… - Nature protocols, 2016 - nature.com
As the second most common type of variation in the human genome, insertions and deletions
(indels) have been linked to many diseases, but the discovery of indels of more than a few …

Accounting for uncertainty in DNA sequencing data

JA O'Rawe, S Ferson, GJ Lyon - Trends in Genetics, 2015 - cell.com
Science is defined in part by an honest exposition of the uncertainties that arise in
measurements and propagate through calculations and inferences, so that the reliabilities of its …

Excitation creates a distributed pattern of cortical suppression due to varied recurrent input

JF O'Rawe, Z Zhou, AJ Li, PK LaFosse, HC Goldbach… - Neuron, 2023 - cell.com
Dense local, recurrent connections are a major feature of cortical circuits, yet how they affect
neurons' responses has been unclear, with some studies reporting weak recurrent effects, …

[HTML][HTML] Natural language of uncertainty: numeric hedge words

…, J O'Rawe, A Antonenko, J Siegrist, J Mickley… - International Journal of …, 2015 - Elsevier
An important part of processing elicited numerical inputs is an ability to quantitatively decode
natural-language words that are commonly used to express or modify numerical values. …

Amplified cortical neural responses as animals learn to use novel activity patterns

…, PK LaFosse, M Beiran, CE Deveau, J O'Rawe… - Current Biology, 2023 - cell.com
Cerebral cortex supports representations of the world in patterns of neural activity, used by
the brain to make decisions and guide behavior. Past work has found diverse, or limited, …

[HTML][HTML] Functional neural network configuration in late childhood varies by age and cognitive state

TM Le, AS Huang, J O'Rawe, HC Leung - Developmental Cognitive …, 2020 - Elsevier
Late childhood and early adolescence is characterized by substantial brain maturation which
contributes to both adult-like and age-dependent resting-state network connectivity patterns…

Preschool negative emotionality predicts activity and connectivity of the fusiform face area and amygdala in later childhood

SJ Kann, JF O'Rawe, AS Huang… - Social cognitive and …, 2017 - academic.oup.com
Negative emotionality (NE) refers to individual differences in the propensity to experience
and react with negative emotions and is associated with increased risk of psychological …