[HTML][HTML] The zebrafish reference genome sequence and its relationship to the human genome

…, C Raisen, L Dyer, K Leung, L Robertson, K Ambridge… - Nature, 2013 - nature.com
Zebrafish have become a popular organism for the study of vertebrate gene function 1 , 2 .
The virtually transparent embryos of this species, and the ability to accelerate genetic studies …

[HTML][HTML] Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data

…, JF McRae, M Van Kogelenberg, DA King, K Ambridge… - The Lancet, 2015 - thelancet.com
Background Human genome sequencing has transformed our understanding of genomic
variation and its relevance to health and disease, and is now starting to enter clinical practice …

[HTML][HTML] Immune disease risk variants regulate gene expression dynamics during CD4+ T cell activation

…, E Cano-Gamez, DJ Smyth, K Ambridge, Z Ke… - Nature …, 2022 - nature.com
During activation, T cells undergo extensive gene expression changes that shape the
properties of cells to exert their effector function. Understanding the regulation of this process …

[PDF][PDF] Histone lysine methylases and demethylases in the landscape of human developmental disorders

…, A Sifrim, S Aitken, N Akawi, M Alvi, K Ambridge… - The American Journal of …, 2018 - cell.com
Histone lysine methyltransferases (KMTs) and demethylases (KDMs) underpin gene regulation.
Here we demonstrate that variants causing haploinsufficiency of KMTs and KDMs are …

Blood and immune development in human fetal bone marrow and Down syndrome

…, K Ambridge, MS Jain, M Efremova, K Pickard… - Nature, 2021 - nature.com
… We thank the CRUK Cambridge Institute Genomics core for processing all Cambridge
libraries amd sequencing, and K. Nazor, B. Yeung and TS Huang (BioLegend) for discussions to …

[PDF][PDF] Heterozygous variants in KMT2E cause a spectrum of neurodevelopmental disorders and epilepsy

…, A Sifrim, S Aitken, N Akawi, M Alvi, K Ambridge… - The American Journal of …, 2019 - cell.com
We delineate a KMT2E-related neurodevelopmental disorder on the basis of 38 individuals
in 36 families. This study includes 31 distinct heterozygous variants in KMT2E (28 …

[PDF][PDF] Bi-allelic loss-of-function CACNA1B mutations in progressive epilepsy-dyskinesia

…, A Sifrim, S Aitken, N Akawi, M Alvi, K Ambridge… - The American Journal of …, 2019 - cell.com
… ERM acknowledges support from NIHR Cambridge Biomedical Research Centre, an NIHR
Senior Investigator Award, and the University of Cambridge has received salary support in …

[HTML][HTML] Single cell derived mRNA signals across human kidney tumors

…, C Burke, E Prigmore, K Ambridge, K Roberts… - Nature …, 2021 - nature.com
Tumor cells may share some patterns of gene expression with their cell of origin, providing
clues into the differentiation state and origin of cancer. Here, we study the differentiation state …

Prevalence, phenotype and architecture of developmental disorders caused by de novo mutation: The Deciphering Developmental Disorders Study

…, AW Sifrim, S Aitken, N Akawi, M Alvi, K Ambridge… - BioRxiv, 2016 - biorxiv.org
Individuals with severe, undiagnosed developmental disorders (DDs) are enriched for damaging
de novo mutations (DNMs) in developmentally important genes. We exome sequenced …

[HTML][HTML] Comparison of 2 chromogenic media for the detection of extended-spectrum β-lactamase producing Enterobacteriaceae stool carriage in nursing home …

B Blane, HJ Brodrick, T Gouliouris, KE Ambridge… - … and Infectious Disease, 2016 - Elsevier
… coli or K. pneumoniae that appeared to lack ESBL or AmpC activity and for which the basis
of growth on the media was not known (Table 2). The Enterobacter cloacae did not contain a …