User profiles for K. Koutroumpas

Konstantina Koutroumpa

Postdoctoral researcher, Botanischer Garten und Botanisches Museum Berlin, Freie …
Verified email at bgbm.org
Cited by 221

[HTML][HTML] An organelle-specific protein landscape identifies novel diseases and molecular mechanisms

K Boldt, J Van Reeuwijk, Q Lu, K Koutroumpas… - Nature …, 2016 - nature.com
Cellular organelles provide opportunities to relate biological mechanisms to disease. Here
we use affinity proteomics, genetics and cell biology to interrogate cilia: poorly understood …

[HTML][HTML] CiliaCarta: An integrated and validated compendium of ciliary genes

…, H Kremer, H Omran, K Szymanska, K Koutroumpas… - PloS one, 2019 - journals.plos.org
The cilium is an essential organelle at the surface of mammalian cells whose dysfunction
causes a wide range of genetic diseases collectively called ciliopathies. The current rate at …

Stochastic hybrid modeling of DNA replication across a complete genome

J Lygeros, K Koutroumpas… - Proceedings of the …, 2008 - National Acad Sciences
DNA replication in eukaryotic cells initiates from hundreds of origins along their genomes,
leading to complete duplication of genetic information before cell division. The large number …

An expanded molecular phylogeny of Plumbaginaceae, with emphasis on Limonium (sea lavenders): Taxonomic implications and biogeographic considerations

K Koutroumpa, S Theodoridis, BH Warren… - Ecology and …, 2018 - Wiley Online Library
… by reviewing online databases, floras and published studies includes 595–599 species, K.
Koutroumpa pers. obs.). Its main diversity occurs in the Mediterranean region, where ca. …

Cross-species hybridization and the origin of North African date palms

…, Z Mo, K Koutroumpa… - Proceedings of the …, 2019 - National Acad Sciences
… STRUCTURE runs with the independent allele-frequency model produced clusters at K = 2
to K = 4 that … Higher K values did not assign samples to any additional meaningful sources. …

[HTML][HTML] Geo-Climatic Changes and Apomixis as Major Drivers of Diversification in the Mediterranean Sea Lavenders (Limonium Mill.)

K Koutroumpa, BH Warren, S Theodoridis… - Frontiers in Plant …, 2021 - frontiersin.org
The Mediterranean realm, comprising the Mediterranean and Macaronesian regions, has
long been recognized as one of the world’s biodiversity hotspots, owing to its remarkable …

Stochastic hybrid modeling of biochemical processes

P Kouretas, K Koutroumpas, J Lygeros… - Stochastic Hybrid …, 2006 - books.google.com
… The simulation algorithm keeps track of the function g (q, x (k)) at each step, k, of the … k∆, the
probability that it will be ON at time (k+ 1)∆ depends on the concentration of SigH at the time k

Asymmetries of reproductive isolation are reflected in directionalities of hybridization: integrative evidence on the complexity of species boundaries

…, MD Nowak, S Theodoridis, K Koutroumpa… - New …, 2021 - Wiley Online Library
The complex nature of species boundaries has been a central topic in evolutionary biology
ever since Darwin. Despite numerous separate studies on reproductive isolation and …

Parameter identification for stochastic hybrid systems using randomized optimization: A case study on subtilin production by Bacillus subtilis

K Koutroumpas, E Cinquemani, P Kouretas… - Nonlinear Analysis …, 2008 - Elsevier
… As a consequence, we may only hope that the estimates k ˆ 2 and k ˆ 5 drawn from the
observation of P are such that ( d k ˆ 2 , d − 1 k ˆ 5 ) is close to the true parameter values ( k 2 ∗ , …

Bayesian parameter estimation for the Wnt pathway: An infinite mixture models approach

K Koutroumpas, P Ballarini, I Votsi… - Bioinformatics, 2016 - academic.oup.com
… The Markov kernels K that are used to draw new particles starting from the previous ones …
kernels that are designed taking into account the k-nearest neighbors for each particle tend to …