Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

…, NA Beutler, DR Burton, LL Lewis-Ximenez… - Nature protocols, 2017 - nature.com
… . We expect that this method will work for larger virus genomes, but we have not tested
this protocol with viral genomes longer than 12 kb. The protocol is designed for infections …

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

…, CR Gonzalez-Bonilla, CF Arias, LL Lewis-Ximenez… - Nature, 2017 - nature.com
Transmission of Zika virus (ZIKV) in the Americas was first confirmed in May 2015 in northeast
Brazil 1 . Brazil has had the highest number of reported ZIKV cases worldwide (more than …

[HTML][HTML] Serological evidence of hepatitis E virus infection in different animal species from the Southeast of Brazil

CL Vitral, MA Pinto, LL Lewis-Ximenez… - Memorias do Instituto …, 2005 - SciELO Brasil
Serological evidence of hepatitis E virus infection (HEV) has been observed in both humans
and different animal species living in non-endemic areas, suggesting that animals could be …

Broadly directed virus-specific CD4+ T cell responses are primed during acute hepatitis C infection, but rapidly disappear from human blood with viral persistence

…, D Ciuffreda, L Lewis-Ximenez… - Journal of Experimental …, 2012 - rupress.org
Vigorous proliferative CD4 + T cell responses are the hallmark of spontaneous clearance of
acute hepatitis C virus (HCV) infection, whereas comparable responses are absent in …

Differentiation of exhausted CD8+ T cells after termination of chronic antigen stimulation stops short of achieving functional T cell memory

…, LL Lewis-Ximenez, L Massenet-Regad… - Nature …, 2021 - nature.com
T cell exhaustion is associated with failure to clear chronic infections and malignant cells.
Defining the molecular mechanisms of T cell exhaustion and reinvigoration is essential to …

High Level of PD-1 Expression on Hepatitis C Virus (HCV)-Specific CD8+ and CD4+ T Cells during Acute HCV Infection, Irrespective of Clinical Outcome

…, RT Chung, P Klenerman, L Lewis-Ximenez… - Journal of …, 2008 - Am Soc Microbiol
We monitored expression of PD-1 (a mediator of T-cell exhaustion and viral persistence) on
hepatitis C virus (HCV)-specific CD8 + and CD4 + T cells from blood and liver during acute …

Phenotype and function of HBV-specific T cells is determined by the targeted epitope in addition to the stage of infection

…, AY Kim, TF Baumert, J Timm, LL Lewis-Ximenez… - Gut, 2019 - gut.bmj.com
Objective Chronic HBV infection affects more than 250 million people worldwide and remains
a global healthcare problem in part because we lack curative treatment. Sustained viral …

Hepatitis E virus infection in Latin America: a review

…, JE González, LL LewisXimenez… - Journal of medical …, 2013 - Wiley Online Library
Data reported during recent years reveal the complex picture of the epidemiology of hepatitis
E virus (HEV) infection in Latin America. Whereas in countries like Argentina and Brazil is …

Viral sequence evolution in acute hepatitis C virus infection

…, J Timm, A Berical, LL Lewis-Ximenez… - Journal of …, 2007 - Am Soc Microbiol
CD8 + -T-cell responses play an important role in the containment and clearance of hepatitis
C virus (HCV) infection, and an association between viral persistence and development of …

Broad repertoire of the CD4+ Th cell response in spontaneously controlled hepatitis C virus infection includes dominant and highly promiscuous epitopes

…, TM Allen, B McGovern, L Lewis-Ximenez… - The Journal of …, 2005 - journals.aai.org
A vigorous hepatitis C virus (HCV)-specific Th cell response is regarded as essential to the
immunological control of HCV viremia. The aim of this study was to comprehensively define …