A review of connectivity map and computational approaches in pharmacogenomics
Large-scale perturbation databases, such as Connectivity Map (CMap) or Library of
Integrated Network-based Cellular Signatures (LINCS), provide enormous opportunities for …
Integrated Network-based Cellular Signatures (LINCS), provide enormous opportunities for …
Metabolic regulation of dermal fibroblasts contributes to skin extracellular matrix homeostasis and fibrosis
X Zhao, P Psarianos, LS Ghoraie, K Yip… - Nature …, 2019 - nature.com
Extracellular matrix (ECM) homeostasis is essential for normal tissue function, and its
disruption by iatrogenic injury, trauma, or disease results in fibrosis. Skin ECM homeostasis is …
disruption by iatrogenic injury, trauma, or disease results in fibrosis. Skin ECM homeostasis is …
Radiomic biomarkers to refine risk models for distant metastasis in HPV-related oropharyngeal carcinoma
Purpose Distant metastasis (DM) is the main cause of death for patients with human
papillomavirus (HPV)–related oropharyngeal cancers (OPCs); yet, there are few reliable predictors …
papillomavirus (HPV)–related oropharyngeal cancers (OPCs); yet, there are few reliable predictors …
Integrative cancer pharmacogenomics to infer large-scale drug taxonomy
… El-Hachem, DMA Gendoo, and LS Ghoraie are the co-first authors of this article. … Fei-Fei
Liu for supporting Laleh Soltan Ghoraie financially. We thank John Chen and Ali Nawed for their …
Liu for supporting Laleh Soltan Ghoraie financially. We thank John Chen and Ali Nawed for their …
[HTML][HTML] A comparative study of cluster detection algorithms in protein–protein interaction for drug target discovery and drug repurposing
J Ma, J Wang, LS Ghoraie, X Men… - Frontiers in …, 2019 - frontiersin.org
The interactions between drugs and their target proteins induce altered expression of genes
involved in complex intracellular networks. The properties of these functional network …
involved in complex intracellular networks. The properties of these functional network …
Inflammatory biomarkers, hematopoietic stem cells, and symptoms in breast cancer patients undergoing adjuvant radiation therapy
…, M McCuske, J Williams, W Xu, LS Ghoraie… - JNCI cancer …, 2020 - academic.oup.com
Background Fatigue and insomnia are common symptoms experienced by breast cancer
patients undergoing adjuvant radiation therapy (RT), yet the underlying mechanisms of these …
patients undergoing adjuvant radiation therapy (RT), yet the underlying mechanisms of these …
[HTML][HTML] Comprehensive expression-based isoform biomarkers predictive of drug responses based on isoform co-expression networks and clinical data
J Ma, J Wang, LS Ghoraie, X Men, R Chen, P Dai - Genomics, 2020 - Elsevier
Drug sensitivity biomarkers are molecular features informative for drug response. Previous
studies have identified many candidate drug-sensitivity signatures at the transcript level …
studies have identified many candidate drug-sensitivity signatures at the transcript level …
[HTML][HTML] Network-based method for drug target discovery at the isoform level
J Ma, J Wang, LS Ghoraie, X Men, L Liu, P Dai - Scientific reports, 2019 - nature.com
Identification of primary targets associated with phenotypes can facilitate exploration of the
underlying molecular mechanisms of compounds and optimization of the structures of …
underlying molecular mechanisms of compounds and optimization of the structures of …
An intelligent traveling service based on SOA
S Navabpour, LS Ghoraie, AA Malayeri… - 2008 IEEE Congress …, 2008 - ieeexplore.ieee.org
This paper describes the implementation of a mashup that integrates travel services. There
are various travel services focusing on flight, train, or bus. However, none of them can plan a …
are various travel services focusing on flight, train, or bus. However, none of them can plan a …
Network-based approach to identify principal isoforms among four cancer types
J Ma, J Wang, LS Ghoraie, X Men, B Haibe-Kains… - Molecular …, 2019 - pubs.rsc.org
Protein isoforms are structurally similar proteins produced by alternative splicing of a single
gene or genes from the same family. Isoforms of a protein can perform the same, similar, or …
gene or genes from the same family. Isoforms of a protein can perform the same, similar, or …