Approximate Bayesian computation in evolution and ecology
MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
… Given observation y, repeat the following until M points have been … ϵ such that the proportion
of accepted points P ϵ =N/M. … The approach draws M∼π(μ) and estimates p(M=μ i |S(y)). …
of accepted points P ϵ =N/M. … The approach draws M∼π(μ) and estimates p(M=μ i |S(y)). …
The Bayesian revolution in genetics
MA Beaumont, B Rannala - Nature Reviews Genetics, 2004 - nature.com
Bayesian statistics allow scientists to easily incorporate prior knowledge into their data
analysis. Nonetheless, the sheer amount of computational power that is required for Bayesian …
analysis. Nonetheless, the sheer amount of computational power that is required for Bayesian …
Adaptation and speciation: what can Fst tell us?
MA Beaumont - Trends in ecology & evolution, 2005 - cell.com
A useful way of summarizing genetic variability among different populations is through
estimates of the inbreeding coefficient, F st . Several recent studies have tried to use the …
estimates of the inbreeding coefficient, F st . Several recent studies have tried to use the …
Approximate Bayesian computation in population genetics
MA Beaumont, W Zhang, DJ Balding - Genetics, 2002 - academic.oup.com
We propose a new method for approximate Bayesian statistical inference on the basis of
summary statistics. The method is suited to complex problems that arise in population genetics, …
summary statistics. The method is suited to complex problems that arise in population genetics, …
Evaluating loci for use in the genetic analysis of population structure
MA Beaumont, RA Nichols - Proceedings of the Royal …, 1996 - royalsocietypublishing.org
Loci that show unusually low or high levels of genetic differentiation are often assumed to be
subject to natural selection. We propose a method for the identification of loci showing such …
subject to natural selection. We propose a method for the identification of loci showing such …
[HTML][HTML] Human genetics shape the gut microbiome
… Forty-six of the 61 samples in which we detected vadinCA11 also contained M. smithii,
indicating that the two most dominant archaeal taxa are not mutually exclusive. Faith’s PD was …
indicating that the two most dominant archaeal taxa are not mutually exclusive. Faith’s PD was …
Identifying adaptive genetic divergence among populations from genome scans
MA Beaumont, DJ Balding - Molecular ecology, 2004 - Wiley Online Library
… seven additional simulations based on the data set M-2L-05. … We first simulated a replicate
M-2L-05 data set, with parameter … m to obtain the required value of F in each subpopulation. …
M-2L-05 data set, with parameter … m to obtain the required value of F in each subpopulation. …
[PDF][PDF] Genetic determinants of the gut microbiome in UK twins
Studies in mice and humans have revealed intriguing associations between host genetics
and the microbiome. Here we report a 16S rRNA-based analysis of the gut microbiome in …
and the microbiome. Here we report a 16S rRNA-based analysis of the gut microbiome in …
Adaptive approximate Bayesian computation
… Histograms of the weighted samples of size M = 5 × 103 produced by five consecutive
uses of (1) on the first row and the population Monte Carlo version on the second row, for the …
uses of (1) on the first row and the population Monte Carlo version on the second row, for the …
Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation
JM Cornuet, F Santos, MA Beaumont, CP Robert… - …, 2008 - academic.oup.com
… in the estimation of posterior distributions for parameters (Beaumont et al., 2002), we …
scenarios, termed hereafter the logistic approach (see also Beaumont, 2008; Fagundes et al., 2007)…
scenarios, termed hereafter the logistic approach (see also Beaumont, 2008; Fagundes et al., 2007)…