User profiles for M. Remm

Maido Remm

University of Tartu
Verified email at ut.ee
Cited by 20715

Primer3—new capabilities and interfaces

…, T Koressaar, J Ye, BC Faircloth, M Remm… - Nucleic acids …, 2012 - academic.oup.com
Polymerase chain reaction (PCR) is a basic molecular biology technique with a multiplicity of
uses, including deoxyribonucleic acid cloning and sequencing, functional analysis of genes…

Enhancements and modifications of primer design program Primer3

T Koressaar, M Remm - Bioinformatics, 2007 - academic.oup.com
… We compared experimentally measured melting temperatures with T m values predicted by
original Primer3 and Tm values predicted by two different formulae in modified Primer3, the …

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

M Remm, CEV Storm, ELL Sonnhammer - Journal of molecular biology, 2001 - Elsevier
… Careful analysis of the original dataset from Remm & Sonnhammer12 revealed that it
contained four cases of long branch attraction. INPARANOID did not detect any of these cases. …

Inparanoid: a comprehensive database of eukaryotic orthologs

KP O'brien, M Remm… - Nucleic acids research, 2005 - academic.oup.com
The Inparanoid eukaryotic ortholog database ( http://inparanoid.cgb.ki.se/ ) is a collection of
pairwise ortholog groups between 17 whole genomes; Anopheles gambiae , Caenorhabditis …

A recent bottleneck of Y chromosome diversity coincides with a global change in culture

…, EK Khusnutdinova, K Johnsen, M Remm… - Genome …, 2015 - genome.cshlp.org
It is commonly thought that human genetic diversity in non-African populations was shaped
primarily by an out-of-Africa dispersal 50–100 thousand yr ago (kya). Here, we present a …

[HTML][HTML] Genetic structure of Europeans: a view from the North–East

…, M Gagnebin, M Macek, M Krawczak, M Remm… - PloS one, 2009 - journals.plos.org
Using principal component (PC) analysis, we studied the genetic constitution of 3,112
individuals from Europe as portrayed by more than 270,000 single nucleotide polymorphisms (…

A first-generation linkage disequilibrium map of human chromosome 22

…, E Lõhmussaar, J Zernant, N Tõnisson, M Remm… - Nature, 2002 - nature.com
DNA sequence variants in specific genes or regions of the human genome are responsible
for a variety of phenotypes such as disease risk or variable drug response 1 . These variants …

Primer3_masker: integrating masking of template sequence with primer design software

…, L Kaplinski, K Raime, R Andreson, M Remm - …, 2018 - academic.oup.com
Designing PCR primers for amplifying regions of eukaryotic genomes is a complicated task
because the genomes contain a large number of repeat sequences and other regions …

Population genetic structure in Indian Austroasiatic speakers: the role of landscape barriers and sex-specific admixture

…, K Thangaraj, L Singh, M Remm… - Molecular biology …, 2011 - academic.oup.com
The geographic origin and time of dispersal of Austroasiatic (AA) speakers, presently settled
in south and southeast Asia, remains disputed. Two rival hypotheses, both assuming a …

[PDF][PDF] Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia

…, M Nelis, R Mägi, E Metspalu, M Remm… - The American Journal of …, 2011 - cell.com
South Asia harbors one of the highest levels genetic diversity in Eurasia, which could be
interpreted as a result of its long-term large effective population size and of admixture during its …