The concept of animals' trajectories from a data analysis perspective

C Calenge, S Dray, M Royer-Carenzi - Ecological informatics, 2009 - Elsevier
The Global Positioning System (GPS) has been increasingly used during the past decade to
monitor the movements of free-ranging animals. This technology allows to automatically …

[HTML][HTML] Massive comparative genomic analysis reveals convergent evolution of specialized bacteria

V Merhej, M Royer-Carenzi, P Pontarotti, D Raoult - Biology direct, 2009 - Springer
Background Genome size and gene content in bacteria are associated with their lifestyles.
Obligate intracellular bacteria (ie, mutualists and parasites) have small genomes that derived …

The exploratory analysis of autocorrelation in animal-movement studies

S Dray, M Royer-Carenzi, C Calenge - Ecological Research, 2010 - Springer
Studies of animal movements have been popularized for many large and shy species by the
increasing use of radio telemetry methods (VHF and GPS technologies). Data are collected …

The reconstructed evolutionary process with the fossil record

G Didier, M Royer-Carenzi, M Laurin - Journal of Theoretical Biology, 2012 - Elsevier
Using the fossil record yields more detailed reconstructions of the evolutionary process than
what is obtained from contemporary lineages only. In this work, we present a stochastic …

The Rhizome of Life: The Sympatric Rickettsia felis Paradigm Demonstrates the Random Transfer of DNA Sequences

…, C Notredame, M Royer-Carenzi… - Molecular biology …, 2011 - academic.oup.com
The intracellular flea symbiont, Rickettsia felis, may meet other organisms intracellularly
such as R. typhi. We used a single-gene phylogenetic approach of the 1375 R. felis genes to …

Choosing the best ancestral character state reconstruction method

M Royer-Carenzi, P Pontarotti, G Didier - Mathematical Biosciences, 2013 - Elsevier
… Under the assumption that character evolution is driven by a Markov model M , we have
seen that the best method is the so-called M -optimal method OP M . This clearly implies that …

Is the European spatial distribution of the HIV-1-resistant CCR5-Δ32 allele formed by a breakdown of the pathocenosis due to the historical Roman expansion?

E Faure, M Royer-Carenzi - Infection, Genetics and Evolution, 2008 - Elsevier
We studied the possible effects of the expansion of ancient Mediterranean civilizations during
the five centuries before and after Christ on the European distribution of the mutant allele …

A comparison of ancestral state reconstruction methods for quantitative characters

M Royer-Carenzi, G Didier - Journal of Theoretical Biology, 2016 - Elsevier
Choosing an ancestral state reconstruction method among the alternatives available for
quantitative characters may be puzzling. We present here a comparison of seven of them, …

To tree or not to tree? Genome-wide quantification of recombination and reticulate evolution during the diversification of strict intracellular bacteria

…, O Chabrol, M Royer-Carenzi… - Genome biology and …, 2013 - academic.oup.com
It is well known that horizontal gene transfer (HGT) is a major force in the evolution of
prokaryotes. During the adaptation of a bacterial population to a new ecological niche, and …

Detecting the molecular basis of phenotypic convergence

O Chabrol, M RoyerCarenzi… - Methods in Ecology …, 2018 - Wiley Online Library
Convergence is the process by which several species independently develop similar traits.
This evolutionary process is not only strongly related to fundamental questions such as the …