User profiles for O. M. Vargas
Oscar M VargasCalifornia State Polytechnic University, Humboldt Verified email at humboldt.edu Cited by 633 |
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae: Diplostephium)
… undergone a recent diversification associated with the uplift of the Andes (Vargas & Madriñán,
2012). … ss), group A must be circumscribed as a different taxon (OM Vargas, unpublished). …
2012). … ss), group A must be circumscribed as a different taxon (OM Vargas, unpublished). …
[HTML][HTML] Characterizing gene tree conflict in plastome-inferred phylogenies
Evolutionary relationships among plants have been inferred primarily using chloroplast data.
To date, no study has comprehensively examined the plastome for gene tree conflict. Using …
To date, no study has comprehensively examined the plastome for gene tree conflict. Using …
Beyond Refugia: New insights on Quaternary climate variation and the evolution of biotic diversity in tropical South America
Haffer’s (Science 165: 131–137, 1969) Pleistocene refuge theory has provided motivation
for 50 years of investigation into the connections between climate, biome dynamics, and …
for 50 years of investigation into the connections between climate, biome dynamics, and …
A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales
Premise Large genomic data sets offer the promise of resolving historically recalcitrant species
relationships. However, different methodologies can yield conflicting results, especially …
relationships. However, different methodologies can yield conflicting results, especially …
Patterns of speciation are similar across mountainous and lowland regions for a Neotropical plant radiation (Costaceae: Costus)
High species richness and endemism in tropical mountains are recognized as major
contributors to the latitudinal diversity gradient. The processes underlying mountain speciation, …
contributors to the latitudinal diversity gradient. The processes underlying mountain speciation, …
Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et al.
Puttick et al. (2017 Proc. R. Soc. B 284, 20162290 ( doi:10.1098/rspb.2016.2290 )) performed
a simulation study to compare accuracy among methods of inferring phylogeny from …
a simulation study to compare accuracy among methods of inferring phylogeny from …
Admixture may be extensive among hyperdominant Amazon rainforest tree species
Admixture is a mechanism by which species of long‐lived plants may acquire novel alleles.
However, the potential role of admixture in the origin and maintenance of tropical plant …
However, the potential role of admixture in the origin and maintenance of tropical plant …
Diversification history of Neotropical Lecythidaceae, an ecologically dominant tree family of Amazon rain forest
The Neotropical subfamily of Lecythidaceae (Lecythidoideae) is a clade of 10 genera with an
estimated number of 232 species. Lecythidaceae is the third most abundant family of trees …
estimated number of 232 species. Lecythidaceae is the third most abundant family of trees …
Target sequence capture in the Brazil nut family (Lecythidaceae): Marker selection and in silico capture from genome skimming data
Reconstructing species trees from multi-loci datasets is becoming a standard practice in
phylogenetics. Nevertheless, access to high-throughput sequencing may be costly, especially …
phylogenetics. Nevertheless, access to high-throughput sequencing may be costly, especially …
Effect of whole-genome sequencing on the clinical management of acutely ill infants with suspected genetic disease: a randomized clinical trial
…, J Knight, AJ Schwarz, OM Vargas-Shiraishi… - JAMA …, 2021 - jamanetwork.com
Importance Whole-genome sequencing (WGS) shows promise as a first-line genetic test for
acutely ill infants, but widespread adoption and implementation requires evidence of an …
acutely ill infants, but widespread adoption and implementation requires evidence of an …