[PDF][PDF] Structure and function of archaeal histones
…, C Van Emmerik, T Brouwer, RA Van der Valk… - Biophysical …, 2018 - cell.com
The genomes of all organisms throughout the tree of life are compacted and organized in
chromatin by association of chromatin proteins. Eukaryotic genomes encode histones, which …
chromatin by association of chromatin proteins. Eukaryotic genomes encode histones, which …
Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity
RA van der Valk, J Vreede, L Qin, GF Moolenaar… - Elife, 2017 - elifesciences.org
… To address this question, van der Valk et al. used biochemical techniques to study the activity
of H-NS from E. coli under different environmental conditions. The experiments show that …
of H-NS from E. coli under different environmental conditions. The experiments show that …
StpA and Hha stimulate pausing by RNA polymerase by promoting DNA–DNA bridging of H-NS filaments
…, DR Hron, L Qin, RA Van Der Valk… - Nucleic acids …, 2018 - academic.oup.com
… These experiments were performed as previously described (RA van der Valk, et al.,
submitted for publication in Methods in Molecular Biology and Ref. 39) with some minor …
submitted for publication in Methods in Molecular Biology and Ref. 39) with some minor …
Genomic looping: a key principle of chromatin organization
RA Van Der Valk, J Vreede, F Crémazy… - Journal of molecular …, 2015 - karger.com
… The association of Hha with H-NS enhances its ability to bridge DNA and form loops [van
der Valk et al., unpubl. results], suggesting a possible mechanism by which Hha affects gene …
der Valk et al., unpubl. results], suggesting a possible mechanism by which Hha affects gene …
Mechanical and structural properties of archaeal hypernucleosomes
…, C van Emmerik, RA van der Valk… - Nucleic Acids …, 2021 - academic.oup.com
Many archaea express histones, which organize the genome and play a key role in gene
regulation. The structure and function of archaeal histone–DNA complexes remain however …
regulation. The structure and function of archaeal histone–DNA complexes remain however …
[HTML][HTML] Specific DNA binding of archaeal histones HMfA and HMfB
AM Erkelens, B Henneman, RA van der Valk… - Frontiers in …, 2023 - frontiersin.org
In archaea, histones play a role in genome compaction and are involved in transcription
regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind …
regulation. Whereas archaeal histones bind DNA without sequence specificity, they bind …
PainDETECT: a suitable screening tool for neuropathic pain in patients with painful post-traumatic trigeminal nerve injuries?
…, JG Smith, M Bouchiba, RA van der Valk… - International journal of …, 2014 - Elsevier
The PainDETECT questionnaire (PD-Q), originally developed and validated in a multicentre
study of neuropathic pain (NeP) patients with back pain, is increasingly being applied to …
study of neuropathic pain (NeP) patients with back pain, is increasingly being applied to …
Tethered particle motion analysis of the DNA binding properties of architectural proteins
Architectural DNA binding proteins are key to the organization and compaction of genomic
DNA inside cells. Tethered Particle Motion (TPM) permits analysis of DNA conformation and …
DNA inside cells. Tethered Particle Motion (TPM) permits analysis of DNA conformation and …
Microscale thermophoresis analysis of chromatin interactions
I Corbeski, V Horn, RA Van Der Valk… - … Chromatin: Methods and …, 2018 - Springer
Architectural DNA-binding proteins are key to the organization and compaction of genomic
DNA inside cells. The activity of architectural proteins is often subject to further modulation …
DNA inside cells. The activity of architectural proteins is often subject to further modulation …
[HTML][HTML] Diverse architectural properties of Sso10a proteins: Evidence for a role in chromatin compaction and organization
…, ALH Van Der Meulen, RA Van Der Valk… - Scientific reports, 2016 - nature.com
Sso10a proteins are small DNA-binding proteins expressed by the crenarchaeal model
organism Sulfolobus solfataricus. Based on the structure of Sso10a1, which contains a winged …
organism Sulfolobus solfataricus. Based on the structure of Sso10a1, which contains a winged …