User profiles for R. D. Dar
Roy DarAssistant Professor, University of Illinois at Urbana-Champaign, Dept. of Bioengineering Verified email at illinois.edu Cited by 2517 |
Transcriptional burst frequency and burst size are equally modulated across the human genome
Gene expression occurs either as an episodic process, characterized by pulsatile bursts, or
as a constitutive process, characterized by a Poisson-like accumulation of gene products. It …
as a constitutive process, characterized by a Poisson-like accumulation of gene products. It …
Gene network shaping of inherent noise spectra
Recent work demonstrates that stochastic fluctuations in molecular populations have
consequences for gene regulation 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 . Previous experiments focused on …
consequences for gene regulation 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 . Previous experiments focused on …
Principles for the design of multicellular engineered living systems
Remarkable progress in bioengineering over the past two decades has enabled the formulation
of fundamental design principles for a variety of medical and non-medical applications. …
of fundamental design principles for a variety of medical and non-medical applications. …
BET bromodomain-targeting compounds reactivate HIV from latency via a Tat-independent mechanism
The therapeutic potential of pharmacologic inhibition of bromodomain and extraterminal (BET)
proteins has recently emerged in hematological malignancies and chronic inflammation. …
proteins has recently emerged in hematological malignancies and chronic inflammation. …
Transient-mediated fate determination in a transcriptional circuit of HIV
Steady-state behavior and bistability have been proposed as mechanisms for decision making
in gene circuits 1 , 2 , 3 . However, transient gene expression has also been proposed to …
in gene circuits 1 , 2 , 3 . However, transient gene expression has also been proposed to …
Screening for noise in gene expression identifies drug synergies
Stochastic fluctuations are inherent to gene expression and can drive cell-fate specification.
We used such fluctuations to modulate reactivation of HIV from latency—a quiescent state …
We used such fluctuations to modulate reactivation of HIV from latency—a quiescent state …
Noise in biological circuits
… Along these lines, Weinberger, Dar, and Simpson used measured noise correlation shifts
in HIV-1 transactivation circuits in human immune cells (Jurkat) to determine the strength of …
in HIV-1 transactivation circuits in human immune cells (Jurkat) to determine the strength of …
Perspective: The promise of multi-cellular engineered living systems
Recent technological breakthroughs in our ability to derive and differentiate induced
pluripotent stem cells, organoid biology, organ-on-chip assays, and 3-D bioprinting have all …
pluripotent stem cells, organoid biology, organ-on-chip assays, and 3-D bioprinting have all …
Dynamics of protein noise can distinguish between alternate sources of gene‐expression variability
Within individual cells, two molecular processes have been implicated as sources of noise
in gene expression: (i) Poisson fluctuations in mRNA abundance arising from random birth …
in gene expression: (i) Poisson fluctuations in mRNA abundance arising from random birth …
[PDF][PDF] A post-transcriptional feedback mechanism for noise suppression and fate stabilization
Diverse biological systems utilize fluctuations ("noise") in gene expression to drive lineage-commitment
decisions. However, once a commitment is made, noise becomes detrimental to …
decisions. However, once a commitment is made, noise becomes detrimental to …