User profiles for R. Neme

Rafik Neme

Assistant Professor, Departamento de Química y Biología, Universidad del Norte …
Verified email at uninorte.edu.co
Cited by 1372

[HTML][HTML] Phylogenetic patterns of emergence of new genes support a model of frequent de novoevolution

R Neme, D Tautz - BMC genomics, 2013 - Springer
… Rafik Neme … Other statistical tests were perfomed using R version 2.15.1 [57] and PASW
version … Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TCG: More than just orphans: …

[HTML][HTML] The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity

…, T Hamaji, A Toyoda, A Fujiyama, R Neme… - Nature …, 2016 - nature.com
The transition to multicellularity has occurred numerous times in all domains of life, yet its
initial steps are poorly understood. The volvocine green algae are a tractable system for …

Young genes are highly disordered as predicted by the preadaptation hypothesis of de novo gene birth

BA Wilson, SG Foy, R Neme, J Masel - Nature ecology & evolution, 2017 - nature.com
R. Carvunis, personal communication) to reproduce the classification presented in ref. 3. …
Cordes for discussions, R. Bakaric for assistance with phylostratigraphy and A.-R. Carvunis for …

[HTML][HTML] Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus

B Harr, E Karakoc, R Neme, M Teschke, C Pfeifle… - Scientific data, 2016 - nature.com
Wild populations of the house mouse (Mus musculus) represent the raw genetic material for
the classical inbred strains in biomedical research and are a major model system for …

Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence

R Neme, D Tautz - elife, 2016 - elifesciences.org
10.7554/eLife.09977.001 Deep sequencing analyses have shown that a large fraction of
genomes is transcribed, but the significance of this transcription is much debated. Here, we …

No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution

…, MS Šestak, R Bakarić, R Neme… - Molecular biology …, 2017 - academic.oup.com
Phylostratigraphy is a computational framework for dating the emergence of DNA and protein
sequences in a phylogeny. It has been extensively applied to make inferences on patterns …

Random sequences are an abundant source of bioactive RNAs or peptides

R Neme, C Amador, B Yildirim, E McConnell… - Nature ecology & …, 2017 - nature.com
… Still, minor differences are found for some comparisons in the relative frequency of certain
amino acids, such as less R, D, C, G… The analysis was done using the R package DESeq2 15 . …

Tracing the dynamics of gene transcripts after organismal death

AE Pozhitkov, R Neme, T Domazet-Lošo… - Open …, 2017 - royalsocietypublishing.org
… model best fit the dilution curve with R 2 = 0.99. The equation for this probe is the following:
… well the experimental data fits to the calibration (ie R 2 ). In the Gene Meter approach, the …

Histological classification of endometriosis as a predictor of response to treatment

MS Abrao, RM Neme, FM Carvalho, JM Aldrighi… - International Journal of …, 2003 - Elsevier
Objectives: To evaluate the usefulness of the histological classification of endometriosis in
predicting responses to treatment. Methods: We evaluated 412 biopsy specimens from 241 …

Robot-assisted laparoscopy for deep infiltrating endometriosis: international multicentric retrospective study

P Collinet, P Leguevaque, RM Neme, V Cela… - Surgical …, 2014 - Springer
Background This study aimed to assess the interest in robot-assisted laparoscopy for deep
infiltrating endometriosis and to investigate the perioperative results. Methods From …