User profiles for R. Spitale
Robert SpitaleVerified email at uci.edu Cited by 8212 |
Long intergenic noncoding RNAs: new links in cancer progression
MC Tsai, RC Spitale, HY Chang - Cancer research, 2011 - AACR
The process of cancer metastasis involves a series of sequential and complex steps. Here
we give a perspective on recent results regarding noncoding transcription in cancer …
we give a perspective on recent results regarding noncoding transcription in cancer …
Understanding the transcriptome through RNA structure
RNA structure is crucial for gene regulation and function. In the past, transcriptomes have
largely been parsed by primary sequences and expression levels, but it is now becoming …
largely been parsed by primary sequences and expression levels, but it is now becoming …
[HTML][HTML] Probing the dynamic RNA structurome and its functions
RC Spitale, D Incarnato - Nature Reviews Genetics, 2023 - nature.com
RNA is a key regulator of almost every cellular process, and the structures adopted by RNA
molecules are thought to be central to their functions. The recent fast-paced evolution of high-…
molecules are thought to be central to their functions. The recent fast-paced evolution of high-…
Control of somatic tissue differentiation by the long non-coding RNA TINCR
…, AF Groff, J Chow, D Johnston, GE Kim, RC Spitale… - Nature, 2013 - nature.com
Several of the thousands of human long non-coding RNAs (lncRNAs) have been
functionally characterized 1 , 2 , 3 , 4 ; however, potential roles for lncRNAs in somatic tissue …
functionally characterized 1 , 2 , 3 , 4 ; however, potential roles for lncRNAs in somatic tissue …
Structural imprints in vivo decode RNA regulatory mechanisms
… For each transcript functional site and its flanking regions, we demand a stringent R score
for thousands of transcripts being compared. We generated roughly the same number of …
for thousands of transcripts being compared. We generated roughly the same number of …
Landscape and variation of RNA secondary structure across the human transcriptome
… The false discovery rate (FDR) of the significance of the structural change at the SNV site
is estimated by a multi-hypothesis testing performed using the p.adjust function in R. A SNV is …
is estimated by a multi-hypothesis testing performed using the p.adjust function in R. A SNV is …
RNA SHAPE analysis in living cells
RC Spitale, P Crisalli, RA Flynn, EA Torre… - Nature chemical …, 2013 - nature.com
RNA structure has important roles in practically every facet of gene regulation, but the paucity
of in vivo structural probes limits current understanding. Here we design, synthesize and …
of in vivo structural probes limits current understanding. Here we design, synthesize and …
RNA helicase DDX21 coordinates transcription and ribosomal RNA processing
DEAD-box RNA helicases are vital for the regulation of various aspects of the RNA life cycle
1 , but the molecular underpinnings of their involvement, particularly in mammalian cells, …
1 , but the molecular underpinnings of their involvement, particularly in mammalian cells, …
A biologically stable DNAzyme that efficiently silences gene expression in cells
Y Wang, K Nguyen, RC Spitale, JC Chaput - Nature Chemistry, 2021 - nature.com
Efforts to use RNA-cleaving DNA enzymes (DNAzymes) as gene-silencing agents in therapeutic
applications have stalled due to their low efficacy in clinical trials. Here we report a xeno…
applications have stalled due to their low efficacy in clinical trials. Here we report a xeno…
[PDF][PDF] Development of a chimeric model to study and manipulate human microglia in vivo
iPSC-derived microglia offer a powerful tool to study microglial homeostasis and disease-associated
inflammatory responses. Yet, microglia are highly sensitive to their environment, …
inflammatory responses. Yet, microglia are highly sensitive to their environment, …