User profiles for R. Spitale

Robert Spitale

Verified email at uci.edu
Cited by 8212

Long intergenic noncoding RNAs: new links in cancer progression

MC Tsai, RC Spitale, HY Chang - Cancer research, 2011 - AACR
The process of cancer metastasis involves a series of sequential and complex steps. Here
we give a perspective on recent results regarding noncoding transcription in cancer …

Understanding the transcriptome through RNA structure

Y Wan, M Kertesz, RC Spitale, E Segal… - Nature Reviews …, 2011 - nature.com
RNA structure is crucial for gene regulation and function. In the past, transcriptomes have
largely been parsed by primary sequences and expression levels, but it is now becoming …

[HTML][HTML] Probing the dynamic RNA structurome and its functions

RC Spitale, D Incarnato - Nature Reviews Genetics, 2023 - nature.com
RNA is a key regulator of almost every cellular process, and the structures adopted by RNA
molecules are thought to be central to their functions. The recent fast-paced evolution of high-…

Control of somatic tissue differentiation by the long non-coding RNA TINCR

…, AF Groff, J Chow, D Johnston, GE Kim, RC Spitale… - Nature, 2013 - nature.com
Several of the thousands of human long non-coding RNAs (lncRNAs) have been
functionally characterized 1 , 2 , 3 , 4 ; however, potential roles for lncRNAs in somatic tissue …

Structural imprints in vivo decode RNA regulatory mechanisms

RC Spitale, RA Flynn, QC Zhang, P Crisalli, B Lee… - Nature, 2015 - nature.com
… For each transcript functional site and its flanking regions, we demand a stringent R score
for thousands of transcripts being compared. We generated roughly the same number of …

Landscape and variation of RNA secondary structure across the human transcriptome

…, RA Flynn, O Manor, Z Ouyang, J Zhang, RC Spitale… - Nature, 2014 - nature.com
… The false discovery rate (FDR) of the significance of the structural change at the SNV site
is estimated by a multi-hypothesis testing performed using the p.adjust function in R. A SNV is …

RNA SHAPE analysis in living cells

RC Spitale, P Crisalli, RA Flynn, EA Torre… - Nature chemical …, 2013 - nature.com
RNA structure has important roles in practically every facet of gene regulation, but the paucity
of in vivo structural probes limits current understanding. Here we design, synthesize and …

RNA helicase DDX21 coordinates transcription and ribosomal RNA processing

E Calo, RA Flynn, L Martin, RC Spitale, HY Chang… - Nature, 2015 - nature.com
DEAD-box RNA helicases are vital for the regulation of various aspects of the RNA life cycle
1 , but the molecular underpinnings of their involvement, particularly in mammalian cells, …

A biologically stable DNAzyme that efficiently silences gene expression in cells

Y Wang, K Nguyen, RC Spitale, JC Chaput - Nature Chemistry, 2021 - nature.com
Efforts to use RNA-cleaving DNA enzymes (DNAzymes) as gene-silencing agents in therapeutic
applications have stalled due to their low efficacy in clinical trials. Here we report a xeno…

[PDF][PDF] Development of a chimeric model to study and manipulate human microglia in vivo

…, CK Glass, LM Healy, SP Gandhi, RC Spitale… - Neuron, 2019 - cell.com
iPSC-derived microglia offer a powerful tool to study microglial homeostasis and disease-associated
inflammatory responses. Yet, microglia are highly sensitive to their environment, …