User profiles for T. E. Reddy

Timothy E Reddy

Associate Professor, Duke University
Verified email at duke.edu
Cited by 35153

The psychencode project

…, J Poschmann, AJ Price, M Purcaro, TE Reddy… - Nature …, 2015 - nature.com
Recent research on disparate psychiatric disorders has implicated rare variants in genes
involved in global gene regulation and chromatin modification, as well as many common …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

…, MJ Pazin, MD Perry, D Raha, TE Reddy… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq)
has become a valuable and widely used approach for mapping the genomic location of …

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers

…, PI Thakore, GE Crawford, TE Reddy… - Nature …, 2015 - nature.com
Technologies that enable targeted manipulation of epigenetic marks could be used to
precisely control cell phenotype or interrogate the relationship between the epigenome and …

[HTML][HTML] Architecture of the human regulatory network derived from ENCODE data

…, D Patacsil, F Pauli, D Raha, L Ramirez, TE Reddy… - Nature, 2012 - nature.com
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of genes;
the ensemble of these binding events forms a regulatory network, constituting the wiring …

RNA-guided gene activation by CRISPR-Cas9–based transcription factors

…, KW Leong, F Guilak, GE Crawford, TE Reddy… - Nature …, 2013 - nature.com
Technologies for engineering synthetic transcription factors have enabled many advances
in medical and scientific research. In contrast to existing methods based on engineering of …

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

…, A Safi, NK Shivakumar, AM Kabadi, TE Reddy… - Nature …, 2015 - nature.com
… five times with an LiCl wash buffer (100 mM Tris, pH 7.5, 500 mM LiCl, 1% NP-40, 1% sodium
deoxycholate), and remaining ions were removed with a single wash with 1 mL of TE (10 …

Dynamic DNA methylation across diverse human cell lines and tissues

…, J Gertz, KM Bowling, SL Parker, TE Reddy… - Genome …, 2013 - genome.cshlp.org
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types, …

A comparison of global estimates of marine primary production from ocean color

…, J Marra, F Mélin, K Moore, A Morel, TE Reddy… - Deep Sea Research …, 2006 - Elsevier
The third primary production algorithm round robin (PPARR3) compares output from 24 models
that estimate depth-integrated primary production from satellite measurements of ocean …

Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation

TE Reddy, F Pauli, RO Sprouse, NF Neff… - Genome …, 2009 - genome.cshlp.org
… the beads five times with a LiCl wash buffer (100 mM Tris at pH 7.5, 500 mM LiCl, 1% NP-40,
1% sodium deoxycholate) and removed remaining ions with a single wash with 1 mL of TE (…

[HTML][HTML] Multiplex CRISPR/Cas9-based genome editing for correction of dystrophin mutations that cause Duchenne muscular dystrophy

…, PI Thakore, WH Majoros, TE Reddy… - Nature …, 2015 - nature.com
The CRISPR/Cas9 genome-editing platform is a promising technology to correct the genetic
basis of hereditary diseases. The versatility, efficiency and multiplexing capabilities of the …