User profiles for T. E. Reddy
Timothy E ReddyAssociate Professor, Duke University Verified email at duke.edu Cited by 35153 |
The psychencode project
Recent research on disparate psychiatric disorders has implicated rare variants in genes
involved in global gene regulation and chromatin modification, as well as many common …
involved in global gene regulation and chromatin modification, as well as many common …
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq)
has become a valuable and widely used approach for mapping the genomic location of …
has become a valuable and widely used approach for mapping the genomic location of …
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
Technologies that enable targeted manipulation of epigenetic marks could be used to
precisely control cell phenotype or interrogate the relationship between the epigenome and …
precisely control cell phenotype or interrogate the relationship between the epigenome and …
[HTML][HTML] Architecture of the human regulatory network derived from ENCODE data
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of genes;
the ensemble of these binding events forms a regulatory network, constituting the wiring …
the ensemble of these binding events forms a regulatory network, constituting the wiring …
RNA-guided gene activation by CRISPR-Cas9–based transcription factors
Technologies for engineering synthetic transcription factors have enabled many advances
in medical and scientific research. In contrast to existing methods based on engineering of …
in medical and scientific research. In contrast to existing methods based on engineering of …
Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements
…, A Safi, NK Shivakumar, AM Kabadi, TE Reddy… - Nature …, 2015 - nature.com
… five times with an LiCl wash buffer (100 mM Tris, pH 7.5, 500 mM LiCl, 1% NP-40, 1% sodium
deoxycholate), and remaining ions were removed with a single wash with 1 mL of TE (10 …
deoxycholate), and remaining ions were removed with a single wash with 1 mL of TE (10 …
Dynamic DNA methylation across diverse human cell lines and tissues
As studies of DNA methylation increase in scope, it has become evident that methylation has
a complex relationship with gene expression, plays an important role in defining cell types, …
a complex relationship with gene expression, plays an important role in defining cell types, …
A comparison of global estimates of marine primary production from ocean color
The third primary production algorithm round robin (PPARR3) compares output from 24 models
that estimate depth-integrated primary production from satellite measurements of ocean …
that estimate depth-integrated primary production from satellite measurements of ocean …
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
… the beads five times with a LiCl wash buffer (100 mM Tris at pH 7.5, 500 mM LiCl, 1% NP-40,
1% sodium deoxycholate) and removed remaining ions with a single wash with 1 mL of TE (…
1% sodium deoxycholate) and removed remaining ions with a single wash with 1 mL of TE (…
[HTML][HTML] Multiplex CRISPR/Cas9-based genome editing for correction of dystrophin mutations that cause Duchenne muscular dystrophy
The CRISPR/Cas9 genome-editing platform is a promising technology to correct the genetic
basis of hereditary diseases. The versatility, efficiency and multiplexing capabilities of the …
basis of hereditary diseases. The versatility, efficiency and multiplexing capabilities of the …