User profiles for T. J. Kobayashi

Tetsuya J. Kobayashi

- Verified email at mail.crmind.net - Cited by 2097

Tai Kobayashi

- Verified email at pennmedicine.upenn.edu - Cited by 1794

Feedback repression is required for mammalian circadian clock function

…, H Ukai, JE Baggs, LJ Miraglia, TJ Kobayashi… - Nature …, 2006 - nature.com
Direct evidence for the requirement of transcriptional feedback repression in circadian clock
function has been elusive. Here, we developed a molecular genetic screen in mammalian …

[PDF][PDF] Atypical cadherins Dachsous and Fat control dynamics of noncentrosomal microtubules in planar cell polarity

T Harumoto, M Ito, Y Shimada, TJ Kobayashi… - Developmental cell, 2010 - cell.com
How global organ asymmetry and individual cell polarity are connected to each other is a
central question in studying planar cell polarity (PCP). In the Drosophila wing, which develops …

Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks

H Ukai, TJ Kobayashi, M Nagano, K Masumoto… - nature cell …, 2007 - nature.com
Singularity behaviour in circadian clocks 1 , 2 — the loss of robust circadian rhythms following
exposure to a stimulus such as a pulse of bright light — is one of the fundamental but …

[HTML][HTML] Machine learning approaches to TCR repertoire analysis

…, R Yokota, T Akiyama, TJ Kobayashi - Frontiers in …, 2022 - frontiersin.org
Sparked by the development of genome sequencing technology, the quantity and quality of
data handled in immunological research have been changing dramatically. Various data and …

[HTML][HTML] 3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis

…, D Mashiko, Z Ikeda, NF Hiroi, TJ Kobayashi… - NPJ systems biology …, 2020 - nature.com
During embryogenesis, cells repeatedly divide and dynamically change their positions in
three-dimensional (3D) space. A robust and accurate algorithm to acquire the 3D positions of …

[PDF][PDF] Balancing acts of two HEAT subunits of condensin I support dynamic assembly of chromosome axes

K Kinoshita, TJ Kobayashi, T Hirano - Developmental Cell, 2015 - cell.com
Condensin I is a five-subunit protein complex that plays a central role in mitotic chromosome
assembly and segregation in eukaryotes. To dissect its mechanism of action, we …

Implementation of dynamic Bayesian decision making by intracellular kinetics

TJ Kobayashi - Physical review letters, 2010 - APS
Decision making in a noisy and dynamically changing environment is a fundamental task for
a cell. To choose appropriate decisions over time, a cell must be equipped with intracellular …

Kinetic derivation of the Hessian geometric structure in chemical reaction networks

TJ Kobayashi, D Loutchko, A Kamimura… - Physical Review …, 2022 - APS
The theory of chemical kinetics forms the basis to describe the dynamics of chemical reaction
networks. Owing to physical and thermodynamic constraints, the networks possess various …

Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions

TJ Kobayashi, D Loutchko, A Kamimura… - Physical Review …, 2022 - APS
We derive the Hessian geometric structure of nonequilibrium chemical reaction networks on
the flux and force spaces induced by the Legendre duality of convex dissipation functions …

Multivariate analysis of noise in genetic regulatory networks

R Tomioka, H Kimura, TJ Kobayashi… - Journal of theoretical …, 2004 - Elsevier
Stochasticity is an intrinsic property of genetic regulatory networks due to the low copy numbers
of the major molecular species, such as, DNA, mRNA, and regulatory proteins. Therefore…