Feedback repression is required for mammalian circadian clock function
…, H Ukai, JE Baggs, LJ Miraglia, TJ Kobayashi… - Nature …, 2006 - nature.com
Direct evidence for the requirement of transcriptional feedback repression in circadian clock
function has been elusive. Here, we developed a molecular genetic screen in mammalian …
function has been elusive. Here, we developed a molecular genetic screen in mammalian …
[PDF][PDF] Atypical cadherins Dachsous and Fat control dynamics of noncentrosomal microtubules in planar cell polarity
T Harumoto, M Ito, Y Shimada, TJ Kobayashi… - Developmental cell, 2010 - cell.com
How global organ asymmetry and individual cell polarity are connected to each other is a
central question in studying planar cell polarity (PCP). In the Drosophila wing, which develops …
central question in studying planar cell polarity (PCP). In the Drosophila wing, which develops …
Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks
H Ukai, TJ Kobayashi, M Nagano, K Masumoto… - nature cell …, 2007 - nature.com
Singularity behaviour in circadian clocks 1 , 2 — the loss of robust circadian rhythms following
exposure to a stimulus such as a pulse of bright light — is one of the fundamental but …
exposure to a stimulus such as a pulse of bright light — is one of the fundamental but …
[HTML][HTML] Machine learning approaches to TCR repertoire analysis
…, R Yokota, T Akiyama, TJ Kobayashi - Frontiers in …, 2022 - frontiersin.org
Sparked by the development of genome sequencing technology, the quantity and quality of
data handled in immunological research have been changing dramatically. Various data and …
data handled in immunological research have been changing dramatically. Various data and …
[HTML][HTML] 3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis
During embryogenesis, cells repeatedly divide and dynamically change their positions in
three-dimensional (3D) space. A robust and accurate algorithm to acquire the 3D positions of …
three-dimensional (3D) space. A robust and accurate algorithm to acquire the 3D positions of …
[PDF][PDF] Balancing acts of two HEAT subunits of condensin I support dynamic assembly of chromosome axes
K Kinoshita, TJ Kobayashi, T Hirano - Developmental Cell, 2015 - cell.com
Condensin I is a five-subunit protein complex that plays a central role in mitotic chromosome
assembly and segregation in eukaryotes. To dissect its mechanism of action, we …
assembly and segregation in eukaryotes. To dissect its mechanism of action, we …
Implementation of dynamic Bayesian decision making by intracellular kinetics
TJ Kobayashi - Physical review letters, 2010 - APS
Decision making in a noisy and dynamically changing environment is a fundamental task for
a cell. To choose appropriate decisions over time, a cell must be equipped with intracellular …
a cell. To choose appropriate decisions over time, a cell must be equipped with intracellular …
Kinetic derivation of the Hessian geometric structure in chemical reaction networks
TJ Kobayashi, D Loutchko, A Kamimura… - Physical Review …, 2022 - APS
The theory of chemical kinetics forms the basis to describe the dynamics of chemical reaction
networks. Owing to physical and thermodynamic constraints, the networks possess various …
networks. Owing to physical and thermodynamic constraints, the networks possess various …
Hessian geometry of nonequilibrium chemical reaction networks and entropy production decompositions
TJ Kobayashi, D Loutchko, A Kamimura… - Physical Review …, 2022 - APS
We derive the Hessian geometric structure of nonequilibrium chemical reaction networks on
the flux and force spaces induced by the Legendre duality of convex dissipation functions …
the flux and force spaces induced by the Legendre duality of convex dissipation functions …
Multivariate analysis of noise in genetic regulatory networks
R Tomioka, H Kimura, TJ Kobayashi… - Journal of theoretical …, 2004 - Elsevier
Stochasticity is an intrinsic property of genetic regulatory networks due to the low copy numbers
of the major molecular species, such as, DNA, mRNA, and regulatory proteins. Therefore…
of the major molecular species, such as, DNA, mRNA, and regulatory proteins. Therefore…