User profiles for T. J. Sharpton
Thomas J. SharptonAssociate Professor, Oregon State University Verified email at oregonstate.edu Cited by 18441 |
[HTML][HTML] An introduction to the analysis of shotgun metagenomic data
TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …
and clarified the relationship between host-associated microbial communities and host …
[HTML][HTML] Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities
…, CR Armour, C Hu, M Mei, C Tian, TJ Sharpton… - Frontiers in …, 2019 - frontiersin.org
The advent of large-scale microbiome studies affords newfound analytical opportunities to
understand how these communities of microbes operate and relate to their environment. …
understand how these communities of microbes operate and relate to their environment. …
Zebrafish microbiome studies make waves
Zebrafish have a 50-year history as a model organism for studying vertebrate developmental
biology and more recently have emerged as a powerful model system for studying …
biology and more recently have emerged as a powerful model system for studying …
[HTML][HTML] Metacoder: An R package for visualization and manipulation of community taxonomic diversity data
ZSL Foster, TJ Sharpton… - PLoS computational …, 2017 - journals.plos.org
Community-level data, the type generated by an increasing number of metabarcoding
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. …
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. …
[HTML][HTML] A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter
Obesity is an important and intractable public health problem. In addition to the well-known
risk factors of behavior, diet, and genetics, gut microbial communities were recently identified …
risk factors of behavior, diet, and genetics, gut microbial communities were recently identified …
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
While most Ascomycetes tend to associate principally with plants, the dimorphic fungi
Coccidioides immitis and Coccidioides posadasii are primary pathogens of immunocompetent …
Coccidioides immitis and Coccidioides posadasii are primary pathogens of immunocompetent …
Global marine bacterial diversity peaks at high latitudes in winter
… S Riesenfeld, B Dorazio, J Eisen, JC Thrash, JA Gilbert, N Fierer, G Howard and VL Sharpton
provided valuable insight and discussion. This research was funded by Gordon and Betty …
provided valuable insight and discussion. This research was funded by Gordon and Betty …
Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control
We have sequenced the genomes of 18 isolates of the closely related human pathogenic
fungi Coccidioides immitis and Coccidioides posadasii to more clearly elucidate population …
fungi Coccidioides immitis and Coccidioides posadasii to more clearly elucidate population …
The influence of ethnicity and geography on human gut microbiome composition
CA Gaulke, TJ Sharpton - Nature medicine, 2018 - nature.com
… Sharpton … Sharpton … Gaulke, CA, Sharpton, TJ The influence of ethnicity and
geography on human gut microbiome composition. Nat Med 24, 1495–1496 (2018). https://doi.org/10.1038/s41591-018-0210-8 …
geography on human gut microbiome composition. Nat Med 24, 1495–1496 (2018). https://doi.org/10.1038/s41591-018-0210-8 …
[HTML][HTML] Profile hidden Markov models for the detection of viruses within metagenomic sequence data
Rapid, sensitive, and specific virus detection is an important component of clinical diagnostics.
Massively parallel sequencing enables new diagnostic opportunities that complement …
Massively parallel sequencing enables new diagnostic opportunities that complement …