User profiles for T. J. Sharpton

Thomas J. Sharpton

Associate Professor, Oregon State University
Verified email at oregonstate.edu
Cited by 18441

[HTML][HTML] An introduction to the analysis of shotgun metagenomic data

TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …

[HTML][HTML] Microbiome multi-omics network analysis: statistical considerations, limitations, and opportunities

…, CR Armour, C Hu, M Mei, C Tian, TJ Sharpton… - Frontiers in …, 2019 - frontiersin.org
The advent of large-scale microbiome studies affords newfound analytical opportunities to
understand how these communities of microbes operate and relate to their environment. …

Zebrafish microbiome studies make waves

K Stagaman, TJ Sharpton, K Guillemin - Lab animal, 2020 - nature.com
Zebrafish have a 50-year history as a model organism for studying vertebrate developmental
biology and more recently have emerged as a powerful model system for studying …

[HTML][HTML] Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

ZSL Foster, TJ Sharpton… - PLoS computational …, 2017 - journals.plos.org
Community-level data, the type generated by an increasing number of metabarcoding
studies, is often graphed as stacked bar charts or pie graphs that use color to represent taxa. …

[HTML][HTML] A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter

MM Finucane, TJ Sharpton, TJ Laurent, KS Pollard - PloS one, 2014 - journals.plos.org
Obesity is an important and intractable public health problem. In addition to the well-known
risk factors of behavior, diet, and genetics, gut microbial communities were recently identified …

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives

TJ Sharpton, JE Stajich, SD Rounsley… - Genome …, 2009 - genome.cshlp.org
While most Ascomycetes tend to associate principally with plants, the dimorphic fungi
Coccidioides immitis and Coccidioides posadasii are primary pathogens of immunocompetent …

Global marine bacterial diversity peaks at high latitudes in winter

J Ladau, TJ Sharpton, MM Finucane, G Jospin… - The ISME …, 2013 - academic.oup.com
… S Riesenfeld, B Dorazio, J Eisen, JC Thrash, JA Gilbert, N Fierer, G Howard and VL Sharpton
provided valuable insight and discussion. This research was funded by Gordon and Betty …

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

DE Neafsey, BM Barker, TJ Sharpton… - Genome …, 2010 - genome.cshlp.org
We have sequenced the genomes of 18 isolates of the closely related human pathogenic
fungi Coccidioides immitis and Coccidioides posadasii to more clearly elucidate population …

The influence of ethnicity and geography on human gut microbiome composition

CA Gaulke, TJ Sharpton - Nature medicine, 2018 - nature.com
SharptonSharpton … Gaulke, CA, Sharpton, TJ The influence of ethnicity and
geography on human gut microbiome composition. Nat Med 24, 1495–1496 (2018). https://doi.org/10.1038/s41591-018-0210-8 …

[HTML][HTML] Profile hidden Markov models for the detection of viruses within metagenomic sequence data

P Skewes-Cox, TJ Sharpton, KS Pollard, JL DeRisi - PloS one, 2014 - journals.plos.org
Rapid, sensitive, and specific virus detection is an important component of clinical diagnostics.
Massively parallel sequencing enables new diagnostic opportunities that complement …