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InfoDengue: a nowcasting system for the surveillance of dengue fever transmission

Claudia Codeco, Oswaldo Cruz, Thais I Riback, Carolin M Degener, Marcelo F Gomes, Daniel Villela, Leonardo Bastos, Sabrina Camargo, Valeria Saraceni, Maria Cristina F Lemos, Flavio C Coelho
doi: https://doi.org/10.1101/046193
Claudia Codeco
Fundacao Oswaldo Cruz;
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Oswaldo Cruz
Fundacao Oswaldo Cruz;
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Thais I Riback
Fundacao Oswaldo Cruz;
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Carolin M Degener
Fundacao Oswaldo Cruz;
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Marcelo F Gomes
Fundacao Oswaldo Cruz;
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Daniel Villela
Fundacao Oswaldo Cruz;
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Leonardo Bastos
Fundacao Oswaldo Cruz;
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Sabrina Camargo
Fundacao Getulio Vargas;
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Valeria Saraceni
Prefeitura Rio de Janeiro
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Maria Cristina F Lemos
Prefeitura Rio de Janeiro
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Flavio C Coelho
Fundacao Getulio Vargas;
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Abstract

This study describes the development of an integrated dengue alert system (InfoDengue), operating initially in the city of Rio de Janeiro, Brazil. It is a project developed as a partnership between academia and the municipal health secretariat. At the beginning of each epidemiological week, the system captures climate time series, dengue case reporting and activity on a social network. After data pre-processing, including a probabilistic correction of case notification delay, and calculation of dengue's effective reproductive number, indicators of dengue transmission are coded into four dengue situation levels, for each of the city's ten health districts. A risk map is generated to inform the public about the week's level of attention and the evolution of the disease incidence and suggest actions. A report is also sent automatically to the municipality's situation room, containing a detailed presentation of the data and alert levels by health district. The preliminary analysis of InfoDengue in Rio de Janeiro, using historical series from 2011 to 2014 and prospective data from January to December 2015, indicates good degree of confidence and accuracy. The successful experience in the city of Rio de Janeiro is a motivating argument for the expansion of InfoDengue to other cities. After a year in production, InfoDengue has become a unique source of carefully curated data for epidemiological studies, combining epidemological and environmental variables in unprecedented spatial and temporal resolutions.

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The copyright holder for this preprint is the author/funder. All rights reserved. No reuse allowed without permission.
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  • Posted March 29, 2016.

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InfoDengue: a nowcasting system for the surveillance of dengue fever transmission
Claudia Codeco, Oswaldo Cruz, Thais I Riback, Carolin M Degener, Marcelo F Gomes, Daniel Villela, Leonardo Bastos, Sabrina Camargo, Valeria Saraceni, Maria Cristina F Lemos, Flavio C Coelho
bioRxiv 046193; doi: https://doi.org/10.1101/046193
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InfoDengue: a nowcasting system for the surveillance of dengue fever transmission
Claudia Codeco, Oswaldo Cruz, Thais I Riback, Carolin M Degener, Marcelo F Gomes, Daniel Villela, Leonardo Bastos, Sabrina Camargo, Valeria Saraceni, Maria Cristina F Lemos, Flavio C Coelho
bioRxiv 046193; doi: https://doi.org/10.1101/046193

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