Biochemistry

ZymePackNet: rotamer-sampling free graph neural network method for protein sidechain prediction
Abhishek Mukhopadhyay, Amit Kadan, Benjamin McMaster, J. Liam McWhirter, Surjit B. Dixit

bioRxiv 2023.05.05.539648; doi: https://doi.org/10.1101/2023.05.05.539648 New Results

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Light Activated BioID (LAB): an optically activated proximity labeling system to study protein-protein interactions
Omer Shafraz, Carolyn Marie Orduno Davis, Sanjeevi Sivasankar

bioRxiv 2022.10.22.513249; doi: https://doi.org/10.1101/2022.10.22.513249 New Results

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Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX
Lainey J. Williamson, Marina Galchenkova, Hannah L. Best, Richard J. Bean, Anna Munke, Salah Awel, Gisel Pena, Juraj Knoska, Robin Schubert, Katerina Doerner, Hyun-Woo Park, Dennis K. Bideshi, Alessandra Henkel, Viviane Kremling, Bjarne Klopprogge, Emyr Lloyd-Evans, Mark Young, Joana Valerio, Marco Kloos, Marcin Sikorski, Grant Mills, Johan Bielecki, Henry Kirkwood, Chan Kim, Raphael de Wijn, Kristina Lorenzen, P. Lourdu Xavier, Aida Rahmani, Luca Gelisio, Oleksandr Yefanov, Adrian P. Mancuso, Brian Federici, Henry N. Chapman, Neil Crickmore, Pierre J. Rizkallah, Colin Berry, Dominik Oberthür

bioRxiv 2022.01.14.476343; doi: https://doi.org/10.1101/2022.01.14.476343 New Results

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Nanomolar range of FAM237B can activate receptor GPR83
Hao-Zheng Li, Ya-Fen Wang, Wen-Feng Hu, Ya-Li Liu, Zeng-Guang Xu, Zhan-Yun Guo

bioRxiv 2023.05.04.539513; doi: https://doi.org/10.1101/2023.05.04.539513 New Results

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PROTEOMICS OF HYPOTHERMIC ADAPTATION REVEALS THAT RBM3 ENHANCES MITOCHONDRIAL METABOLISM AND MUSCLE STEM-CELL DIFFERENTIATION
Paulami Dey, Srujanika Rajalaxmi, Purvi Singh Thakur, Maroof Athar Hashmi, Heera Lal, Nistha Saini, Sneha Muralidharan, Raviswamy G H Math, Pushpita Saha, Swarang Sachin Pundlik, Nirpendra Singh, Arvind Ramanathan

bioRxiv 2023.05.05.539524; doi: https://doi.org/10.1101/2023.05.05.539524 New Results

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Evolutionary adaptation from hydrolytic to oxygenolytic catalysis
Soi Bui, Sara Gil-Guerrero, Peter van der Linden, Philippe Carpentier, Matteo Ceccarelli, Pablo G. Jambrina, Roberto A. Steiner

bioRxiv 2023.05.05.539528; doi: https://doi.org/10.1101/2023.05.05.539528 New Results

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An acetylation-mediated chromatin switch governs H3K4 methylation read-write capability
Kanishk Jain, Matthew R. Marunde, Jonathan M. Burg, Susan L. Gloor, Faith M. Joseph, Karl F. Poncha, Zachary B. Gillespie, Keli L. Rodriguez, Irina K. Popova, Nathan W. Hall, Anup Vaidya, Sarah A. Howard, Hailey F. Taylor, Laylo Mukhsinova, Ugochi C. Onuoha, Emily F. Patteson, Spencer W. Cooke, Bethany C. Taylor, Ellen N. Weinzapfel, Marcus A. Cheek, Matthew J. Meiners, Geoffrey C. Fox, Kevin E. W. Namitz, Martis W. Cowles, Krzysztof Krajewski, Zu-Wen Sun, Michael S. Cosgrove, Nicolas L. Young, Michael-Christopher Keogh, Brian D. Strahl

bioRxiv 2022.02.28.482307; doi: https://doi.org/10.1101/2022.02.28.482307 New Results

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Structural and biochemical characterisation of the N-Carbamoyl-β-Alanine Amidohydrolase from Rhizobium radiobacter MDC 8606
Ani Paloyan, Armen Sargsyan, Mariam D. Karapetyan, Artur Hambardzumyan, Sergey Kocharov, Henry Panosyan, Karine Dyukova, Marina Kinosyan, Anna Krüger, Cecilia Piergentili, Will A. Stanley, Arnaud Baslé, Jon Marles-Wright, Garabed Antranikian

bioRxiv 2023.05.04.538398; doi: https://doi.org/10.1101/2023.05.04.538398 New Results

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Visualizing the chaperone-mediated folding trajectory of the G protein β5 β-propeller
Shuxin Wang, Mikaila I. Sass, Yujin Kwon, W. Grant Ludlam, Theresa M. Smith, Ethan J. Carter, Nathan E. Gladden, Margot Riggi, Janet H. Iwasa, Barry M. Willardson, Peter S. Shen

bioRxiv 2023.05.04.539424; doi: https://doi.org/10.1101/2023.05.04.539424 New Results

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VERY LONG-CHAIN ACYL-CoA SYNTHETASE-3 (ACSVL3) PROMOTES THE MALIGNANT GROWTH BEHAVIOR OF U87 GLIOMA CELLS VIA CHANGES IN CELL CYCLE WITHOUT AFFECTING APOPTOSIS
Haiyan Yang, Xiaohai Shi, Elizabeth A. Kolar, Emily M. Clay, Shuli Xia, Zhengtong Pei, Paul A. Watkins

bioRxiv 2023.05.04.539403; doi: https://doi.org/10.1101/2023.05.04.539403 New Results

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Biochemistry

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