Bioinformatics

DoubletDecon: Cell-State Aware Removal of Single-Cell RNA-Seq Doublets
Erica A.K. DePasquale, Daniel J Schnell, Inigo Valiente, Burns C Blaxall, H. L Grimes, Harinder Singh, Nathan Salomonis

bioRxiv 364810; doi: https://doi.org/10.1101/364810 New Results
Forecasting autism gene discovery with machine learning and genome-scale data
Leo Brueggeman, Tanner Koomar, Jacob Michaelson

bioRxiv 370601; doi: https://doi.org/10.1101/370601 New Results
PANOPLY: Omics-guided drug prioritization method tailored to an individual patient
Krishna Rani Kalari, Jason P. Sinnwell, Kevin J. Thompson, Xiaojia Tang, Erin E. Carlson, Jia Yu, Peter T. Vedell, James N. Ingle, Richard Weinshilboum, Liewei Wang, Judy C. Boughey, Matthew P. Goetz, Vera J. Suman

bioRxiv 176396; doi: https://doi.org/10.1101/176396 New Results
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
Florian Plaza Oñate, Emmanuelle Le Chatelier, Mathieu Almeida, Alessandra C. L. Cervino, Franck Gauthier, Frédéric Magoulès, S. Dusko Ehrlich, Matthieu Pichaud

bioRxiv 173203; doi: https://doi.org/10.1101/173203 New Results
Cis-topic modelling of single cell epigenomes
Carmen Bravo González-Blas, Liesbeth Minnoye, Dafni Papasokrati, Sara Aibar, Gert Hulselmans, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts

bioRxiv 370346; doi: https://doi.org/10.1101/370346 New Results
MSTD: an efficient method for detecting multi-scale topological domains from symmetric and asymmetric 3D genomic maps
Yusen Ye, Lin Gao, Shihua Zhang

bioRxiv 370338; doi: https://doi.org/10.1101/370338 New Results
ProfPPIdb: pairs of physical protein-protein interactions predicted for entire proteomes
Linh Tran, Tobias Hamp, Burkhard Rost

bioRxiv 332510; doi: https://doi.org/10.1101/332510 New Results
Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes
Joshua P Earl, Nithin D Adappa, Jaroslaw Krol, Archana S Bhat, Sergey Balashov, Rachel L Ehrlich, James N Palmer, Alan D Workman, Mariel Blasetti, Jocelyn Hammond, Noam A Cohen, Garth D Ehrlich, Joshua C Mell

bioRxiv 338731; doi: https://doi.org/10.1101/338731 New Results
Structure probing data enhances RNA-RNA interaction prediction
Milad Miladi, Soheila Montaseri, Rolf Backofen, Martin Raden

bioRxiv 359323; doi: https://doi.org/10.1101/359323 New Results
Mining functional annotations across species
Sven Warris, Steven Dijkxhoorn, Teije van Sloten, Bart T.L.H. van de Vossenberg

bioRxiv 369785; doi: https://doi.org/10.1101/369785 New Results

Bioinformatics

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