Bioinformatics

Minerva: An Alignment and Reference Free Approach to Deconvolve Linked-Reads for Metagenomics
David C. Danko, Dmitry Meleshko, Daniela Bezdan, Christopher Mason, Iman Hajirasouliha

bioRxiv 217869; doi: https://doi.org/10.1101/217869 New Results
GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics
Teppei Shimamura, Yusuke Matsui, Taisuke Kajino, Satoshi Ito, Takashi Takahashi, Satoru Miyano

bioRxiv 349928; doi: https://doi.org/10.1101/349928 New Results
Discovery of biased orientation of human DNA motif sequences affecting enhancer-promoter interactions and transcription of genes
Naoki Osato

bioRxiv 290825; doi: https://doi.org/10.1101/290825 New Results
MetaMaps - Strain-level metagenomic assignment and compositional estimation for long reads
Alexander Dilthey, Chirag Jain, Sergey Koren, Adam Phillippy

bioRxiv 372474; doi: https://doi.org/10.1101/372474 New Results
Helmsman: fast and efficient generation of input matrices for mutation signature analysis
Jedidiah Carlson, Jun Li, Sebastian Zöllner

bioRxiv 373076; doi: https://doi.org/10.1101/373076 New Results
JEPEGMIX2-P: Novel pathway transcriptomic method greatly increases detection of molecular pathways in cosmopolitan cohorts
Chris Chatzinakos, Donghyung Lee, Cai Na, Anna Docherty, Vladimir Vladimirov, Bradley Webb, Brien Riley, Jonathan Flint, Kenneth Kendler, Silviu-Alin Bacanu

bioRxiv 373050; doi: https://doi.org/10.1101/373050 New Results
DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors
Christopher S McGinnis, Lyndsay M Murrow, Zev J Gartner

bioRxiv 352484; doi: https://doi.org/10.1101/352484 New Results
Multi-omic and multi-view clustering algorithms: review and cancer benchmark
Nimrod Rappoport, Ron Shamir

bioRxiv 371120; doi: https://doi.org/10.1101/371120 New Results
TGFam-Finder: An optimal solution for target-gene family annotation in eukaryotic genomes
Seungill Kim, Kyeongchae Cheong, Jieun Park, Myung-Shin Kim, Ji-Hyun Kim, Min-Ki Seo, Sun-Ho Kwon, Yong-Min Kim, Namjin Koo, Kwang-Soo Kim, Nuri Oh, Ki-Tae Kim, Jongbum Jeon, Hyunbin Kim, Yoon-Young Lee, Kee-Hoon Sohn, Honour McCann, Sang-Kyu Ye, Kyung-Soon Park, Yong-Hwan Lee, Doil Choi

bioRxiv 372433; doi: https://doi.org/10.1101/372433 New Results
RecNW: A fast pairwise aligner for targeted sequencing
Alexandre Yahi, Tuuli Lappalainen, Pejman Mohammadi, Nicholas Tatonetti

bioRxiv 371989; doi: https://doi.org/10.1101/371989 New Results

Bioinformatics

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