Bioinformatics

Reliable variant calling during runtime of Illumina sequencing
Tobias P Loka, Simon H Tausch, Bernhard Y Renard

bioRxiv 387662; doi: https://doi.org/10.1101/387662 New Results
chroGPS2: differential analysis of epigenome maps in R.
Oscar Reina, Fernando Azorin, Camille Stephan-Otto Attolini

bioRxiv 425892; doi: https://doi.org/10.1101/425892 New Results
PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping
Luis Francisco Hernandez Sanchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pal Rasmus Njolstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel

bioRxiv 375097; doi: https://doi.org/10.1101/375097 New Results
NeatSeq-Flow: A Lightweight High Throughput Sequencing Workflow Platform for Non-Programmers and Programmers alike
Menachem Y. Sklarz, Liron Levin, Michal Gordon, Vered Chalifa-Caspi

bioRxiv 173005; doi: https://doi.org/10.1101/173005 New Results
A non-parametric method to compute protein-protein and protein-ligands interfaces. Application to HIV-2 protease-inhibitors complexes
Pierre Laville, Juliette Martin, Guillaume Launay, Leslie Regad, Anne-Claude Camproux, Sjoerd de Vries, Michel Petitjean

bioRxiv 498923; doi: https://doi.org/10.1101/498923 New Results
Analysis of multiple fungal sequence repositories highlights shortcomings in microbial databases
Caitlin Loeffler, Aaron Karlsberg, Eleazar Eskin, David Koslicki, Serghei Mangul

bioRxiv 497867; doi: https://doi.org/10.1101/497867 New Results
High Dimensional Mediation Analysis with Applications to Causal Gene Identification
Qi Zhang

bioRxiv 497826; doi: https://doi.org/10.1101/497826 New Results
Forecasting dengue epidemics using a hybrid methodology
Tanujit Chakraborty, Swarup Chattopadhyay, Indrajit Ghosh

bioRxiv 498394; doi: https://doi.org/10.1101/498394 New Results
Simphony: simulating large-scale, rhythmic data
Jordan M Singer, Darwin Y Fu, Jacob J Hughey

bioRxiv 497859; doi: https://doi.org/10.1101/497859 New Results
Identifying A- and P-site locations on ribosome-protected mRNA fragments using Integer Programming
Nabeel Ahmed, Pietro Sormanni, Prajwal Ciryam, Michele Vendruscolo, Christopher M Dobson, Edward P O'Brien

bioRxiv 490755; doi: https://doi.org/10.1101/490755 New Results

Bioinformatics

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