Bioinformatics

Learning Representations for Gene Ontology Terms by Contextualized Text Encoders
Dat Duong, Ankith Uppunda, Chelsea Jui-Ting Ju, James Zhang, Muhao Chen, Eleazar Eskin, Jingyi Jessica Li, Kai-Wei Chang

bioRxiv 765644; doi: https://doi.org/10.1101/765644 New Results

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Tensor Factorization-based Prediction with an Application to Estimating the Risk of Chronic Diseases
Haolin Wang, Qingpeng Zhang, Youhua Frank Chen, Eman Leung, Eliza Wong, Eng-kiong Yeoh

bioRxiv 810556; doi: https://doi.org/10.1101/810556 New Results

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DeepMicro: deep representation learning for disease prediction based on microbiome data
Min Oh, Liqing Zhang

bioRxiv 785626; doi: https://doi.org/10.1101/785626 New Results

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Time distributed data analysis by Cosinor.Online application
Lubos Molcan

bioRxiv 805960; doi: https://doi.org/10.1101/805960 Confirmatory Results

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Efficient chromosome-scale haplotype-resolved assembly of human genomes
Shilpa Garg, Arkarachai Fungtammasan, Andrew Carroll, Mike Chou, Anthony Schmitt, Xiang Zhou, Stephen Mac, Paul Peluso, Emily Hatas, Jay Ghurye, Jared Maguire, Medhat Mahmoud, Haoyu Cheng, David Heller, Justin M. Zook, Tobias Moemke, Tobias Marschall, Fritz J. Sedlazeck, John Aach, Chen-Shan Chin, George M. Church, Heng Li

bioRxiv 810341; doi: https://doi.org/10.1101/810341 New Results

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Empirical Analysis of Phylogenetic Quasi-Terraces
Paula Breitling, Alexandros Stamatakis, Olga Chernomor, Ben Bettisworth, Lukasz Reszczynski

bioRxiv 810309; doi: https://doi.org/10.1101/810309 New Results

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Discovery of synthetic lethal interactions from large-scale pan-cancer perturbation screens
Sumana Srivatsa, Hesam Montazeri, Gaia Bianco, Mairene Coto-Llerena, Charlotte KY Ng, Salvatore Piscuoglio, Niko Beerenwinkel

bioRxiv 810374; doi: https://doi.org/10.1101/810374 New Results

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Factorial design as a tool to evaluate image analysis workflows systematically: its application to the filament tracing problem
Leandro Aluisio Scholz, Ana Clara Caznok Silveira, Maura Harumi Sugai-Guérios, David Alexander Mitchell

bioRxiv 806216; doi: https://doi.org/10.1101/806216 New Results

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Evaluation of Commercially Available Exosomal Isolation Kits from Human Plasma
Yuzhe Sun, Hefu Zhen, Mei Guo, Jingyu Ye, Zhili Liu, Xiuqing Zhang, Yan Yang, Chao Nie

bioRxiv 808931; doi: https://doi.org/10.1101/808931 New Results

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Gene Ontology Meta Annotator for Plants
Kokulapalan Wimalanathan, Carolyn J. Lawrence-Dill

bioRxiv 809988; doi: https://doi.org/10.1101/809988 New Results

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Bioinformatics

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