Bioinformatics

A survey of mapping algorithms in the long-reads era
Kristoffer Sahlin, Thomas Baudeau, Bastien Cazaux, Camille Marchet

bioRxiv 2022.05.21.492932; doi: https://doi.org/10.1101/2022.05.21.492932 New Results

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Improved antibody-specific epitope prediction using AlphaFold and AbAdapt
Zichang Xu, Ana Davila, Jan Wiamowski, Shunsuke Teraguchi, Daron M. Standley

bioRxiv 2022.05.21.492907; doi: https://doi.org/10.1101/2022.05.21.492907 New Results

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DNAscope: High accuracy small variant calling using machine learning
Donald Freed, Renke Pan, Haodong Chen, Zhipan Li, Jinnan Hu, Rafael Aldana

bioRxiv 2022.05.20.492556; doi: https://doi.org/10.1101/2022.05.20.492556 New Results

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Exon elongation added disordered regions to proteins to facilitate evolution of early eukaryotes
Satoshi Fukuchi, Tamotsu Noguchi, Hiroto Anbo, Keiichi Homma

bioRxiv 2022.04.03.486857; doi: https://doi.org/10.1101/2022.04.03.486857 New Results

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DEGRONOPEDIA - a web server for proteome-wide inspection of degrons
Natalia A. Szulc, Filip Stefaniak, Małgorzata Piechota, Andrea Cappannini, Janusz M. Bujnicki, Wojciech Pokrzywa

bioRxiv 2022.05.19.492622; doi: https://doi.org/10.1101/2022.05.19.492622 New Results

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Graph-based algorithms for Laplace transformed coalescence time distributions
Gertjan Bisschop

bioRxiv 2022.05.20.492768; doi: https://doi.org/10.1101/2022.05.20.492768 New Results

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The rise of sparser single-cell RNAseq datasets; consequences and opportunities
Gerard A. Bouland, Ahmed Mahfouz, Marcel J.T. Reinders

bioRxiv 2022.05.20.492823; doi: https://doi.org/10.1101/2022.05.20.492823 New Results

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Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
Zakieh Tayyebi, Allison R. Pine, Christina S. Leslie

bioRxiv 2022.05.02.490310; doi: https://doi.org/10.1101/2022.05.02.490310 New Results

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DProQ: A Gated-Graph Transformer for Protein Complex Structure Assessment
Xiao Chen, Alex Morehead, Jian Liu, Jianlin Cheng

bioRxiv 2022.05.19.492741; doi: https://doi.org/10.1101/2022.05.19.492741 New Results

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Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning
Qianmu Yuan, Sheng Chen, Yu Wang, Huiying Zhao, Yuedong Yang

bioRxiv 2022.05.20.492769; doi: https://doi.org/10.1101/2022.05.20.492769 New Results

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Bioinformatics

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