Bioinformatics

Balancing sensitivity and specificity in distinguishing TCR groups by CDR sequence similarity
Neerja Thakkar, Chris Bailey-Kellogg

bioRxiv 526467; doi: https://doi.org/10.1101/526467 New Results
Chicdiff: a computational pipeline for detecting differential chromosomal interactions in Capture Hi-C data
Jonathan Cairns, William R. Orchard, Valeriya Malysheva, Mikhail Spivakov

bioRxiv 526269; doi: https://doi.org/10.1101/526269 New Results
Towards reliable named entity recognition in the biomedical domain
John Giorgi, Gary Bader

bioRxiv 526244; doi: https://doi.org/10.1101/526244 New Results
Integration of Mouse and Human Single-cell RNA Sequencing Infers Spatial Cell-type Composition in Human Brains
Travis S Johnson, Zachary B Abrams, Bryan R Helm, Peter Neidecker, Raghu Machiraju, Yan Zhang, Kun Huang, Jie Zhang

bioRxiv 527499; doi: https://doi.org/10.1101/527499 New Results
Dynamical reorganization of transcriptional events governs robust Nanog heterogeneity
Tagari Samanta, Sandip Kar

bioRxiv 527747; doi: https://doi.org/10.1101/527747 New Results
Inferring tumor evolution from longitudinal samples
Matthew A. Myers, Gryte Satas, Benjamin J. Raphael

bioRxiv 526814; doi: https://doi.org/10.1101/526814 New Results
E²M: A Deep Learning Framework for Associating Combinatorial Methylation Patterns with Gene Expression
Jianhao Peng, Idoia Ochoa, Olgica Milenkovic

bioRxiv 527044; doi: https://doi.org/10.1101/527044 New Results
Unsupervised Machine Learning for Analysis of Coexisting Lipid Phases and Domain Growth in Biological Membranes
Cesar A. López, Velimir V. Vesselinov, S. Gnanakaran, Boian S. Alexandrov

bioRxiv 527630; doi: https://doi.org/10.1101/527630 New Results
A Bayesian approach for correcting Tn5 transposition bias in ATAC-seq footprinting
Vinayak V Viswanadham, Vinay S Mahajan, Shiv Pillai

bioRxiv 525808; doi: https://doi.org/10.1101/525808 New Results
Handling noise in protein interaction networks
Fernanda Brito Correia, Edgar D. Coelho, José Luis Oliveira, Joel P. Arrais

bioRxiv 527606; doi: https://doi.org/10.1101/527606 New Results

Bioinformatics

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