Bioinformatics

Hypoxia-related radiomics predict immunotherapy response: A multi-cohort study of NSCLC
Ilke Tunali, Yan Tan, Jhanelle E Gray, Evangelia Katsoulakis, Steven A Eschrich, James Saller, Theresa Boyle, Jin Qi, Albert Guvenis, Robert J Gillies, Matthew B Schabath

bioRxiv 2020.04.02.020859; doi: https://doi.org/10.1101/2020.04.02.020859 New Results

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Comparative single-cell trajectory network enrichment identifies pseudo-temporal systems biology patterns in hematopoiesis and CD8 T-cell development
Alexander G. B. Groenning, Mhaned Oubounyt, Kristiyan Kanev, Jesper Beltoft Lund, Tim Kacprowski, Dietmar Zehn, Richard Rottger, Jan Baumbach

bioRxiv 2020.04.02.021295; doi: https://doi.org/10.1101/2020.04.02.021295 New Results

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In Silico Investigations on Curcuminoids from Curcuma longa as Positive Regulators of Wnt/β-catenin Signaling Pathway in Wound Healing
Riyan Al Islam Reshad, Sayka Alam, Humaira Binte Raihan, Kamrun Nahar Meem, Fatima Rahman, Fardin Zahid, Md. Ikram Rafid, S. M. Obaydur Rahman, Sadman Omit, Md. Hazrat Ali

bioRxiv 2020.03.19.998286; doi: https://doi.org/10.1101/2020.03.19.998286 New Results

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On the discovery of population-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data
Helena L Crowell, Charlotte Soneson, Pierre-Luc Germain, Daniela Calini, Ludovic Collin, Catarina Raposo, Dheeraj Malhotra, Mark Robinson

bioRxiv 713412; doi: https://doi.org/10.1101/713412 New Results

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Shrinkage improves estimation of microbial associations under different normalization methods
Michelle Badri, Zachary Kurtz, Richard Bonneau, Christian L Muller

bioRxiv 406264; doi: https://doi.org/10.1101/406264 New Results

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Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes
Hiro Takahashi, Shido Miyaki, Hitoshi Onouchi, Taichiro Motomura, Nobuo Idesako, Anna Takahashi, Masataka Murase, Shuichi Fukuyoshi, Toshinori Endo, Kenji Satou, Satoshi Naito, Motoyuki Itoh

bioRxiv 672840; doi: https://doi.org/10.1101/672840 New Results

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Biological function polarity prediction of missense variants using machine learning
Adhideb Ghosh, Alexander A. Navarini

bioRxiv 2020.04.03.023440; doi: https://doi.org/10.1101/2020.04.03.023440 New Results

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PhANNs, a fast and accurate tool and web server to classify phage structural proteins
Vito Adrian Cantu Alessio Robles, Peter Salamon, Victor Seguritan, Jackson Redfield, David Salamon, Robert Edwards, Anca Segall

bioRxiv 2020.04.03.023523; doi: https://doi.org/10.1101/2020.04.03.023523 New Results

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When Darkness Becomes a Ray of Light in the Dark Times: Understanding the COVID-19 via the Comparative Analysis of the Dark Proteomes of SARS-CoV-2, Human SARS and Bat SARS-Like Coronaviruses
Rajanish Giri, Taniya Bhardwaj, Meenakshi Shegane, Bhuvaneshwari R Gehi, Prateek Kumar, Kundlik Gadhave, Christopher J. Oldfield, Vladimir N Uversky

bioRxiv 2020.03.13.990598; doi: https://doi.org/10.1101/2020.03.13.990598 New Results

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In silico approach for designing of a multi-epitope based vaccine against novel Coronavirus (SARS-COV-2)
Ratnadeep Saha, Burra VLS Prasad

bioRxiv 2020.03.31.017459; doi: https://doi.org/10.1101/2020.03.31.017459 New Results

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Bioinformatics

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