Bioinformatics

ASTRAL-Pro: quartet-based species tree inference despite paralogy
Chao Zhang, Celine Scornavacca, Erin Molloy, Siavash Mirarab

bioRxiv 2019.12.12.874727; doi: https://doi.org/10.1101/2019.12.12.874727 New Results

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Towards a Chimeric Vaccine against Multiple Isolates of Mycobacteroides - An Integrative Approach
Rohit Satyam, Tulika Bhardwaj, Niraj Kumar Jha

bioRxiv 2019.12.15.869081; doi: https://doi.org/10.1101/2019.12.15.869081 New Results

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Mutation effect estimation on protein-protein interactions using deep contextualized representation learning
Guangyu Zhou, Muhao Chen, Chelsea Jui-Ting Ju, Jyun-Yu Jiang, Zheng Wang, Wei Wang

bioRxiv 2019.12.15.876953; doi: https://doi.org/10.1101/2019.12.15.876953 New Results

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A comprehensive pipeline for accurate annotation and quantification of circRNAs
Sebastian Kadener, Avigayel Rabin, Reut Ashwal-Fluss, Shlomo Shenzis, Daniela Apelblat

bioRxiv 2019.12.15.876755; doi: https://doi.org/10.1101/2019.12.15.876755 New Results

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Clustering using Automatic Differentiation: Misspecified models and High-Dimensional Data
Siva Rajesh Kasa, Vaibhav Rajan

bioRxiv 2019.12.13.876326; doi: https://doi.org/10.1101/2019.12.13.876326 New Results

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PlasClass improves plasmid sequence classification
David Pellow, Itzik Mizrahi, Ron Shamir

bioRxiv 783571; doi: https://doi.org/10.1101/783571 New Results

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Riboflow: using deep learning to classify riboswitches with ~99% accuracy
Keshav Aditya R Premkumar, Ramit Bharanikumar, Ashok Palaniappan

bioRxiv 868695; doi: https://doi.org/10.1101/868695 New Results

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Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models
Sahir Rai Bhatnagar, Yi Yang, Tianyuan Lu, Erwin Schurr, JC Loredo-Osti, Marie Forest, Karim Oualkacha, Celia MT Greenwood

bioRxiv 408484; doi: https://doi.org/10.1101/408484 New Results

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RosettaGPCR: Multiple Template Homology Modeling of GPCRs with Rosetta
Brian Bender, Brennica Marlow, Jens Meiler

bioRxiv 2019.12.13.875237; doi: https://doi.org/10.1101/2019.12.13.875237 New Results

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Broccoli: combining phylogenetic and network analyses for orthology assignment
romain derelle, Hervé Philippe, John K Colbourne

bioRxiv 2019.12.13.875831; doi: https://doi.org/10.1101/2019.12.13.875831 New Results

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Bioinformatics

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