Bioinformatics

iPRESTO: automated discovery of biosynthetic sub-clusters linked to specific natural product substructures
Joris J.R. Louwen, Satria A. Kautsar, Sven van der Burg, Marnix H. Medema, Justin J.J. van der Hooft

bioRxiv 2022.08.05.502908; doi: https://doi.org/10.1101/2022.08.05.502908 New Results

Add to Selected Citations
binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets
Oskar Hickl, Pedro Queirós, Paul Wilmes, Patrick May, Anna Heintz-Buschart

bioRxiv 2021.12.22.473795; doi: https://doi.org/10.1101/2021.12.22.473795 New Results

Add to Selected Citations
Atomic protein structure refinement using all-atom graph representations and SE(3)-equivariant graph neural networks
Tianqi Wu, Jianlin Cheng

bioRxiv 2022.05.06.490934; doi: https://doi.org/10.1101/2022.05.06.490934 New Results

Add to Selected Citations
Multiscale Analysis of Pangenome Enables Improved Representation of Genomic Diversity For Repetitive And Clinically Relevant Genes
Chen-Shan Chin, Sairam Behera, Asif Khalak, Fritz J Sedlazeck, Justin Wagner, Justin M. Zook

bioRxiv 2022.08.05.502980; doi: https://doi.org/10.1101/2022.08.05.502980 New Results

Add to Selected Citations
A General Framework for Representing and Annotating Multifaceted Cell Heterogeneity in Human Cell Atlas
Haoxiang Gao, Kui Hua, Sijie Chen, Qijin Yin, Rui Jiang, Xuegong Zhang

bioRxiv 2021.09.09.459281; doi: https://doi.org/10.1101/2021.09.09.459281 New Results

Add to Selected Citations
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, Hanno Scharr, Katharina Nöh, Ralf Mikut

bioRxiv 2022.04.29.489998; doi: https://doi.org/10.1101/2022.04.29.489998 New Results

Add to Selected Citations
Explainable deep graph learning accurately modeling the peptide secondary structure prediction
Yi Jiang, Ruheng Wang, Jiuxin Feng, Junru Jin, Sirui Liang, Zhongshen Li, Yingying Yu, Anjun Ma, Ran Su, Quan Zou, Qin Ma, Leyi Wei

bioRxiv 2022.06.09.495580; doi: https://doi.org/10.1101/2022.06.09.495580 New Results

Add to Selected Citations
Meta-analysis of transcriptomes in insects showing density-dependent polyphenism
Kouhei Toga, Kakeru Yokoi, Hidemasa Bono

bioRxiv 2022.05.09.490177; doi: https://doi.org/10.1101/2022.05.09.490177 New Results

Add to Selected Citations
Klarigi: Characteristic Explanations for Semantic Data
Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V Gkoutos

bioRxiv 2021.06.14.448423; doi: https://doi.org/10.1101/2021.06.14.448423 New Results

Add to Selected Citations
Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models
Shitong Luo, Yufeng Su, Xingang Peng, Sheng Wang, Jian Peng, Jianzhu Ma

bioRxiv 2022.07.10.499510; doi: https://doi.org/10.1101/2022.07.10.499510 New Results

Add to Selected Citations

Bioinformatics

Pages