Bioinformatics

Evaluation of Convolutionary Neural Networks Modeling of DNA Sequences using Ordinal versus one-hot Encoding Method
Allen Chieng Hoon Choong, Nung Kion Lee

bioRxiv 186965; doi: https://doi.org/10.1101/186965

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Data Science Issues in Understanding Protein-RNA Interactions
Anob M. Chakrabarti, Nejc Haberman, Arne Praznik, Nicholas M. Luscombe, Jernej Ule

bioRxiv 208124; doi: https://doi.org/10.1101/208124

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Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs
Giuseppe Narzisi, André Corvelo, Kanika Arora, Ewa A. Bergmann, Minita Shah, Rajeeva Musunuri, Anne-Katrin Emde, Nicolas Robine, Vladimir Vacic, Michael C. Zody

bioRxiv 196311; doi: https://doi.org/10.1101/196311

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Distribution of Purines and Pyrimidines over miRNAs of Human, Gorilla and Chimpanzee
Jayanta Kumar Das, Pabitra Pal Choudhury, Adwitiya Chaudhuri, Sk. Sarif Hassan, Pallab Basu

bioRxiv 208405; doi: https://doi.org/10.1101/208405

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A probabilistic framework to dissect functional cell-type-specific regulatory elements and risk loci underlying the genetics of complex traits
Yue Li, Jose Davila-Velderrain, Manolis Kellis

bioRxiv 059345; doi: https://doi.org/10.1101/059345

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chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
Mickael Silva, Miguel Machado, Diogo N. Silva, Mirko Rossi, Jacob Moran-Gilad, Sergio Santos, Mario Ramirez, João André Carriço

bioRxiv 173146; doi: https://doi.org/10.1101/173146

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geck: trio-based comparative benchmarking of variant calls
Péter Kómár, Deniz Kural

bioRxiv 208116; doi: https://doi.org/10.1101/208116

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Profiling G protein-coupled receptors of Fasciola hepatica identifies orphan rhodopsins unique to phylum Platyhelminthes
Paul McVeigh, Erin McCammick, Paul McCusker, Duncan Wells, Jane Hodgkinson, Steve Paterson, Angela Mousley, Nikki J. Marks, Aaron G. Maule

bioRxiv 207316; doi: https://doi.org/10.1101/207316

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Elucidation of dose-dependent transcriptional events immediately following ionizing radiation exposure
Eric C. Rouchka, Robert M. Flight, Brigitte H. Fasciotto, Rosendo Estrada, John W. Eaton, Phani K. Patibandla, Sabine J. Waigel, Dazhuo Li, John K. Kirtley, Palaniappan Sethu, Robert S. Keynton

bioRxiv 207951; doi: https://doi.org/10.1101/207951

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ascend: R package for analysis of single cell RNA-seq data
Anne Senabouth, Samuel W Lukowski, Jose Alquicira Hernandez, Stacey Andersen, Xin Mei, Quan H Nguyen, Joseph E Powell

bioRxiv 207704; doi: https://doi.org/10.1101/207704

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Bioinformatics

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