Bioinformatics

Deep learning of the splicing (epi)genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision
Yungang Xu, Yongcui Wang, Jiesi Luo, Weiling Zhao, Xiaobo Zhou

bioRxiv 189183; doi: https://doi.org/10.1101/189183

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seq-seq-pan: Building a computational pan-genome data structure on whole genome alignment
Christine Jandrasits, Piotr W Dabrowski, Stephan Fuchs, Bernhard Y Renard

bioRxiv 188904; doi: https://doi.org/10.1101/188904

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SodaPop: A computational suite for simulating the dynamics of asexual populations
Louis Gauthier, Rémicia Di Franco, Adrian W.R. Serohijos

bioRxiv 189142; doi: https://doi.org/10.1101/189142

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Pathways of DNA unlinking: A story of stepwise simplification
Robert Stolz, Masaaki Yoshida, Reuben Brasher, Michelle Flanner, Kai Ishihara, David J. Sherratt, Koya Shimokawa, Mariel Vazquez

bioRxiv 188722; doi: https://doi.org/10.1101/188722

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FlashFry: a fast and flexible tool for large-scale CRISPR target design
Aaron McKenna, Jay Shendure

bioRxiv 189068; doi: https://doi.org/10.1101/189068

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A whole genome analysis of the red-crowned crane provides insight into avian longevity
HyeJin Lee, Oksung Chung, Yun Sung Cho, Sungwoong Jho, JeHoon Jun, Jessica A. Weber, Jungeun Kim, Jeongheui Lim, Jeremy S. Edwards, Woon Kee Paek, Jong Bhak

bioRxiv 188656; doi: https://doi.org/10.1101/188656

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Developing a 3- to 6-state EEG-based brain-computer interface for a robotic manipulator control
Yuriy Mishchenko, Murat Kaya, Erkan Ozbay, Hilmi Yanar

bioRxiv 171025; doi: https://doi.org/10.1101/171025

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Organisation of feed-forward loop motifs reveals architectural principles in natural and engineered networks
Thomas E. Gorochowski, Claire S. Grierson, Mario di Bernardo

bioRxiv 188821; doi: https://doi.org/10.1101/188821

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xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria
Eliot C Bush, Anne E Clark, Carissa A DeRanek, Alexander Eng, Juliet Forman, Kevin Heath, Alexander B Lee, Daniel M Stoebel, Zunyan Wang, Matthew Wilber, Helen Wu

bioRxiv 188599; doi: https://doi.org/10.1101/188599

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Edge Detection of Cryptic Lamellipodia Assisted by Deep Learning
Chuangqi Wang, Shawn Kang, Eunice Kim, Xitong Zhang, Hee June Choi, Aaron Choi, Kwonmoo Lee

bioRxiv 181263; doi: https://doi.org/10.1101/181263

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Bioinformatics

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