Bioinformatics

CscoreTool: Fast Hi-C Compartment Analysis at High Resolution
Xiaobin Zheng, Yixian Zheng

bioRxiv 188490; doi: https://doi.org/10.1101/188490

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Interactive Visual Analysis of Mass Cytometry Data by Hierarchical Stochastic Neighbor Embedding Reveals Rare Cell Types
Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel J. T. Reinders, Elmar Eisemann, Frits Koning, Anna Vilanova, Boudewijn P. F. Lelieveldt

bioRxiv 169888; doi: https://doi.org/10.1101/169888

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NetMHCpan 4.0: Improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data
Vanessa Jurtz, Sinu Paul, Massimo Andreatta, Paolo Marcatili, Bjoern Peters, Morten Nielsen

bioRxiv 149518; doi: https://doi.org/10.1101/149518

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Population networks from DNA sequences: methodological developments
B. Schaeffer, V. Nicolas, F. Austerlitz, C. Larédo

bioRxiv 188268; doi: https://doi.org/10.1101/188268

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hmmIBD: software to infer pairwise identity by descent between haploid genotypes
Stephen F. Schaffner, Aimee R. Taylor, Wesley Wong, Dyann F. Wirth, Daniel E. Neafsey

bioRxiv 188078; doi: https://doi.org/10.1101/188078

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SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices
Netta Mendelson Cohen, Pedro Olivares-Chauvet, Yaniv Lubling, Yael Baran, Aviezer Lifshitz, Michael Hoichman, Amos Tanay

bioRxiv 187203; doi: https://doi.org/10.1101/187203

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Sensitive and specific post-call filtering of genetic variants in xenograft and primary tumors
Brian K Mannakee, Uthra Balaji, Agnieszka K. Witkiewicz, Ryan N. Gutenkunst, Erik S. Knudsen

bioRxiv 187468; doi: https://doi.org/10.1101/187468

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Methylation-To-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, And Pathologic Complete Response in Multiple Cohorts
Jeffrey A. Thompson, Brock C. Christensen, Carmen J. Marsit

bioRxiv 187526; doi: https://doi.org/10.1101/187526

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dBBQs : dataBase of Bacterial Quality scores
Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David Ussery

bioRxiv 187641; doi: https://doi.org/10.1101/187641

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A minimalist approach to protein identification
G. Sampath

bioRxiv 187013; doi: https://doi.org/10.1101/187013

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Bioinformatics

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